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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp13106_c0_seq1
Scaffold_idBomo_Chr11
NCBI non-redundant
(nr)		U1_small_nuclear_ribonucleoprotein_70_kDa_[Trichuris_trichiura]
Ontology
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030529 C ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0043484 P regulation of RNA splicing
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:26.73 TPM:26.89
ORF EntryO_BomoSK12855_complete:A_BomoSK_comp13106_c0_seq1
Sequence
(Nucleotide)
CCCGCAACGCGTCGCCCCCAGTCCCCCACCTGTGAGATACAGCATTACTTATAGTGATAT
TTTTAGATTATAAATTCCTGGCCTAAAATAGTAAGTGTACTATTTTAGGTCAAGAATTTA
TAATCTAAAAATTTATGATATTGAATTTTTATTTTTATAATTATTTTTTTTAATTATTCC
TCACTTGCAGATACGATTAATATTGCCATTGCCTTGTCTTTTTTGGATGATATTTGTTGT
ATCTCAAGCAAAAAACTAGAAATCAAGTTGCTATCAAAAGTAACTTAGCTGCGATACTCC
ATGAGCACATTATGAAAGCAATGACCACTCCTAGGACGCGGCGATGTGAGGTCTCGTACA
AACTGCACAACCCTACATATCTTTATTGGAATCAACGTTGGTCCGGGCCGAGGAGTCCTG
CGGTCCCCCACTCACTCCGCGGCCCCCATCTCTCTGCGGTTCCCCTTCCACGCAGCGGCC
CCCTCCCACTCCGCGGCCCCCCCTTAGTTCTGAGCGGGCGTCGGACGGGGACCGGGCGAG
CGGCGTTGCGTCCGGTTGCAGATACGTACCGAGCCGACGTGGTAACCATCCCTTGACCGT
CCTGGCGCGCTCCACGTCCACCAATACCCGCTTACCGTCAATCTTCTTACCGTCCGCGTG
CTTGTATGCCGCTGAAATACACCACGGAAAGATAATTACAAATAAAGCGATCGGACGCCT
CATTCCACGTCTTACCTTAACGACAATGCCTTTAATTAAATCAGTTCAATTTTTATACTT
TCTTCTCCCGACTATTTCCAGCTTACCATTTTATACTTTGAGACAGACAAAACTTACCGA
TCCCTGGTCAAATCGTTCGTTTTGTTTTAAATAATAATAATAATTTAATTCTAATAAAAT
AAATATCACGTAACGACATTGAGACACTACAAATAAAATTGAAACTAAAACATCAATTAG
GGCAGACGAATTAACATTTGTCGATGAACTGTTAGATATCTCAAACGTGAGACATGAGGT
CGAATTCAACTTTCACACACTTTATTCGTTCATTAGTTTCGTATTTAGTCCAAAACTAAT
ATTAAAACGACATGTGTACAATGGAAACGTCACTTACTTAATGACAGATGTCAAAATTGA
CCGCTGCCATTTTGACACTGACTCTTCTCTTTATTGCTCTCGGCCCGCTCGGGGCACCGT
TAATTGATTTCGCAGCGGAAACAGGCAGGGCTCACGATACACTCTCCCCAGACACAGAAA
AAATAATCGGAAGTTTGATTTTGACTTTAGTTGGCCCCTTTAGTGTCACAGTATTTATGT
ATTTTTTTATAATTTTTTATTGGAAATACATCACCCTGCGTGCGCGTCTGGTGACGATAT
AGACTATAATATGTTTACTGTCAAACTCAAGTTTCAATTTTTTGTCAAAACCAACCAAAA
TAAACATTGACGGTTTTGGAAGAAAAAAAAACCTGTCAAACTTTTAAGAATCTCAGTGTG
TACAGGTGAAAATCCGTACACAAATATAACGCAATAAGTAGTTCTATTATCTTTTCCCTG
AAAGAAAAACTTTGCAACTGTATTTTCAACAGCTAAATATTTTACATAAATAATAATAAT
GAACAACTGGCATACCTACGCTTTGAATACCCACCTACCGATAACAGAGCCGACCGTCGA
ATAAATATATTTATATATATATATATATATA
(1711 bp)

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