SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp12954_c0_seq2
Scaffold_idBomo_Chr10
NCBI non-redundant
(nr)		PREDICTED:_syntaxin-1A_isoform_X4_[Bombyx_mori]
Ontology
GO:0000149 F SNARE binding
GO:0000281 P mitotic cytokinesis
GO:0005484 F SNAP receptor activity
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006836 P neurotransmitter transport
GO:0006886 P intracellular protein transport
GO:0006887 P exocytosis
GO:0006906 P vesicle fusion
GO:0006936 P muscle contraction
GO:0007268 P chemical synaptic transmission
GO:0007269 P neurotransmitter secretion
GO:0007274 P neuromuscular synaptic transmission
GO:0007317 P regulation of pole plasm oskar mRNA localization
GO:0007349 P cellularization
GO:0007482 P haltere development
GO:0008021 C synaptic vesicle
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016081 P synaptic vesicle docking
GO:0016192 P vesicle-mediated transport
GO:0017157 P regulation of exocytosis
GO:0031201 C SNARE complex
GO:0031629 P synaptic vesicle fusion to presynaptic active zone membrane
GO:0042335 P cuticle development
GO:0043195 C terminal bouton
GO:0048278 P vesicle docking
Transcript
Level		FPKM:5.35 TPM:5.39
ORF EntryO_BomoSK12417_complete:A_BomoSK_comp12954_c0_seq2
Sequence
(Nucleotide)
GTATTAAGCGAAATGCCGCTTAAACCAAATAGCCATTTCACCCCACGAAATATAAAAATA
GCGATTTTTTTTCCCGACGTAATATTAGGTCACCATGAAACAGAGTTATAATACTTAGCG
GTGTTGTCTAACTGAACAGACGAAACACAAACATATTTTCTATATTTAACTGATTTTAAT
TTATTTTATTTAACTGATTCTAATTTATTTTATTTAACTGATTTTAAACAAACGAAAACT
ATAAATTCGCATTGTTATATTTTCATCGTTACTTTTGTTATCGAGATTATTTCTTTAGTA
CAAAAGTAGCATTGAAAAGAGAATTAAAAAAAATAATTTAGCTTAACATTAATTTAGTCC
ACGTTGTTGAGAACGTAACAAAAAAAGCTACCAATTTAGTAGTAGGAATTTTAAGCAAAT
CGATGCAATAGTATACATATATAATACAATAACTTCGTATTTCTGTTTGAAAATAATAAA
TTATTAATTGGTTACGAAATAATAACGTATGAAAGAAAAAAAACTTGTTTGTAAATAAAA
ATCAATGCGATAAATAACTTGTGATGTTACCTAACTATTAATACTAAATTTCTATCAAAT
ATTATTCACAGACGCTATGAAGATATCTCTGGTAACACCAGCGAAGCTAAACAAGTTTTT
TTTTTAAATAACTTACTTATTAGCACAAACATTTTTATTGCACTTTATAAATTAATATTG
TCTTCAATTTTGTCTACCGCAATGGTATAACTATTTCTACATGTTTACAAGATGTTAAAA
ACGTGGGATATATTATATTTTTTCAATCACAATGTTTATATATGTTACAGATAAGATTAT
CTATCTAGCACGTAAAGATCAAAACAGATAGCATCAAAATATTATCACTTCTTGATACCG
ACATGTTGATTTATAGATATGCCAGCATTTTCAAACATCTTGAAAATAACGATCCACGTA
TGTAAACATCCATTGTGAAAATCGAGACATAAAATGCAAGAACCTTTAAATATATCGTTT
TAGTGAACCTTAATATTAGAGGCATAAAGGTCAACTCTATTTTATAGTTTTGTGGGTAGT
TTTGTCGTATTTTCCTTGAGAATCTTATTCGAACCTACTACATTTTTCAGTAATCAAATT
ATTAAAAAAAAAACTACCCTTCAAGATGATCGGATACAAAAGTTTCAATTATCGACCTTG
TGCCTCTAATGTATAAAGCTTATAGTTGTATAGAGAAAAAAAAACGGGTTTTCGTGCTCG
ATGTTTGTATAGTGTTTTTTATTCATACTCATTCCATGTGTACGGTCCGATGGGTGACGT
CACGAGCGATGCTCCGTGTCGCGTCGTTTAACTCAGCACGATCGCGAGCACTATTATTAA
TATAACCAGCGTAACAGACAGGCATATTATGATGAAGATTTTTTTCTTTCGCGCTTTGAT
CATATATTCGCGAGCTTTATTGATCTCTTGTCGGCCGCTGCCCACGTAGTCGGTGGTCTG
CGTCACTTGGTACTCGATGCGGTCTACGAGCTCGCCCTGGCTTTCGACTAGCATCGCCAT
GTCCATGAACATGTCGTGGAGCTCACGGATCGATGTCTCCAGCTTGATGATGTCGGCGTG
TCGGGCTTCGATGTCGGCAAGCGTCTGCTTCGCCTGTTGAGTCTCCATGATAATCCCTTG
AGTGAAAACGGCCGAGTTGCCTTGTTCGAGCATTTCCTCGAGTTCATCGTCGGTGGTGGC
GCGGCCCGTGATCTCGAGTTGTCTCTGTATCCGGCTCTTGCAGCGATCTCTGTAGTCGGT
CTGCGTGCGGTTGTACTCGGTCATCACCTCGACGAACTTACGGGAGAGAGTTGAATGTTG
GGTCTTTCTTATCCTGAGATCGGCCGACGATTTGTTCGAGTGCTCCTCTTGTTCGATGTT
CTGTTCTATATGTTTTAATTTTCCTCTGACTTTGTTGGCAGTTTTCTTGACATCAGCCAT
AAGATCCTCAAGTTCATGCTTCGTTTTTTCATCTGACTGTGGCGCTGATAAGATGGCACT
GTGCTTTTTCTTCACTTCTTCGACGTTCGCCTGAATCTTGTCTATCATCTCTCGTATTTC
TTCAACCTCACTGAAGAATTCATCCATGAAGCCACCTTCGACGGCAACGTTGACATCGTC
AGGCCCGACGTCGTCATCGTCGCTCTGCGCCGCTTGAAGCGCCGCTAACCTGTCCTTCGT
CATCCTTTACAGAGAATCACGCACCAAGTAAACGTTTTTTCTCGTTACACAATCCCATTC
AAAGATATTTTTCTAACAAACGTCACTAAACTAAAGGACACGAACACTACGTTCACTTCA
CTCAAAAAATCGATACCATACAAAACGTTCAGACGAGCAAAACTTCACTTATCGCTGGTC
GCTACACTCGC
(2411 bp)

- SilkBase 1999-2023 -