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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp12918_c0_seq1
Scaffold_idBomo_Chr11
NCBI non-redundant
(nr)		PREDICTED:_LOW_QUALITY_PROTEIN:_DNA_excision_repair_protein_haywire_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000990 F obsolete transcription factor activity, core RNA polymerase binding
GO:0001111 P promoter clearance from RNA polymerase II promoter
GO:0001113 P transcription open complex formation at RNA polymerase II promoter
GO:0003677 F DNA binding
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005675 C transcription factor TFIIH holo complex
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006974 P cellular response to DNA damage stimulus
GO:0009411 P response to UV
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
GO:0043140 F 3'-5' DNA helicase activity
GO:1903506 P regulation of nucleic acid-templated transcription
Transcript
Level		FPKM:9.67 TPM:9.72
ORF EntryO_BomoSK12322_3prime_partial:A_BomoSK_comp12918_c0_seq1
Sequence
(Nucleotide)
GCGCCCTCCCGCTCCTCCTCGCACTCTGTCTCAGAGGCCGCCAGCACCTGTGAGAGTAAA
GTGCCTTGTTCCTCGCGGGTGCCATACAGCATATCGGGCTCTTGATCCATACCTTTTAGT
TCTGTTATAACCTTATAACTGTAACCCTGATTAACAAGAAATCTTTGTCTTTTTCTACTG
TAAGCCATCTCCAAGGTGTCTTGTGATACTAGAGTGTAGAAAAAGGCATTATATTCTTCG
GCCAAAGCGCCTTTCTTTGCTCTTAAAATACGACCTAATCTCTGTGCCTCTTGTCGCCTG
GAGCCTCCGTGCGAAGAGATCTGTATAAGCACGTTCGCTTCGGGCAGATCGAAGCTGGTG
TCGGCGACTTTACTCACGAATATCGTATTCACTTTAGGGTTGAACTTGAAATTCTGGAGG
ATCTGTATTCGCTCGCTCTGGGACGTCGGCCCGTAGATGTATGGCTTGTTCATCTTGACG
GCGTAGTGCCTGAGCGCGAACACGTTGTCGGAGAACACGATGGTCTTGTCGCCGCGCCGC
TCGTGGTAGCGCACCAGGTACTGGCACGCGCGGAACTTCGACGGGTTCATTACGTACAAC
AACATTTTCTTGTTTATTTTCTGCACTAGGTATTCCCTGTAGAACTCTGGCGTCATGGGG
CACCACACCTCGGCGCACTGCACGCGCGCGATGTAGCCGGCCGCCTGCAGCTCGAGCCAG
TTCGCCTCGTACAGCTTCGGGCCTATCAGGAAGTTCAGGTCCGCGATCTTGTCGTCCTCT
CGCAGCAGGGTCGCCGTCAAACCCAGTTTGGCGTGCGAGTGCACGATGGTGAGCACCCTG
CGGAACATTTTGGCAGGTATCGTGTGCACTTCGTCGAGCACGACCAGGCCCCACTCCTGG
GCCTGGAGCCACTTCATCGTCTGTTCGGCCTCCCACGAGCGTCTCTGTCCGTGAGTTATC
ATGGAATACGTCGTTACGAGGATACCCGCTCCCATCGGCTTGTCCTTGGCTTCTGATGTG
AACCTGCAGATCATGCTGTCGTCCGCCGTGGACCAGCACTTGAACTGTTGCTTCCACTGT
TCCACGGAGACGCCGGAGTTGCAGAGCACGAGGGCGCGCTTGCGCACCGTGCACACCGCC
GTCACGCCCACCAGCGACTTGCCGGCGCCGCACGGCAACACTATCACGCCTGACCTCGCC
CTGCCGTTGCCGAACATTTTCCTCAAGCTCTTCTCTTGATAAGGTCGCAAAACGGCAGTT
GGTTTAAGATCAATGTTGATGTCCGGATTGATGGAGTCGTTCCGGAAGTCGTACTCAGCC
AGCAATGGATGCTCCAACTCGATACAACGTTTTTGTATTACTTCGATTTTGTCAGGATCC
ACTTCAAAGGCAACAGCTGCGTTGGCAGTAACACCAGAGGTCTCCTCCTCGTCGTCATCC
TTATCTAGTTGCTGATAGAACTGACTGATGTCGTCGGGCACAGCGCCGTTCGCCGCCGGT
GGTTTTTCTTCACCTGGTTTGGCGAGGGACGTGGCTGGCTTGGCGGGCAGGTCGTTGGAC
AGCAGATCCTCGTCGCCGTCGCGTCGCAGCCTGCACTGTTGAATCACTGGATCTTTCAAT
AGCTTCTGCAGTACCTCCACGTGCTTACTCTCGACTAGATACCTGTTATGTTTTAACACC
AGCTTCACTTTACCATAAGAGAGGGTACATAGTTTAATGAACTCTACGATGCCGGCCGGT
ACAGCACACTTGCTCAGTCTCTGCAGGTACTCAATAATGTCATTGGTCTGTAGGCCCACC
GAAACTGCCGCGTACAAACTGTACGCTGTCAATTTGTATTCATGTATGTGTTGGGGTCTG
CAAACTGGTTCAGCTATAGCAATCAAAAAATCATGAGCATGTTTGTAAACTGGAGAAAAT
GCTTCCAAGAAAATATGTCCATTGGGTGCCACCCATAAAGGACGACTGGCGTTGTCTGGT
TTAAGCGGCATTTGACTTCTATAATCTTTAGCACCAAATTCGTCTTCAGGTACTTGATCA
TTCTTCTCAGCATCTTGCATGGCAGCAACAGGGACCCCATCGTTTTCTGCATTATCATCA
TCTACAAGATCTATTGTTATATCCTCATCTACTTTTTTCTTTTTACTTGATCTATCACTT
CCTCCTTTTGAGTCATATCTCTTGAATTTCTTCGGGGGCCCCATTTTGGTAGAATAGATT
TATTTTTCTCGCCAATCACAATTAACTGTATTTGTATGTACTATTATTCTGTTTTATAAT
CAACTATATGTTCAATTTTTCTGTGAATGTTTGACGCACTATGTATTTGTTGTTAAAGTT
CCTTAGCTTATGCAAGGTTAATAAGGTTACCCATCCAAACATTTCAATTAATTAAATACC
TATCTTTGAAAGTACCCTATTAAAAATTTACTTTGAAAACATCAGATTATATTTTAAAAA
ATCCTAAGTGTTCTATGTTAAAA
(2483 bp)

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