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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp12910_c0_seq6
Scaffold_idBomo_Chr3
NCBI non-redundant
(nr)		Protein_smoothened_[Papilio_machaon]
Ontology
GO:0005581 C collagen trimer
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex
GO:0006378 P mRNA polyadenylation
GO:0006379 P mRNA cleavage
GO:0006397 P mRNA processing
GO:0044822 F RNA binding
Transcript
Level		FPKM:5.24 TPM:5.27
ORF EntryO_BomoSK12297_3prime_partial:A_BomoSK_comp12910_c0_seq6
Sequence
(Nucleotide)
CATTGGTGGCATACTACCTCTTGGTGGCAAATTTCCCATTGGAGGCATATTTCCTAAGGG
TGGCATAGCACCCATGGGTGGCATGCCTGACATGTGTGGAGGAGGCATGTGCATAGAACC
AAGGGGTGGTCTCATAGGGGGTCTAATTGGTCCCATACCCATAGGGGGTCTCATCATGTT
ATTCATAACTAGTGGCATATTAGTCACCTGTTGCATGTTAGACATGTCTGGGCCATTATT
ATATTTTGCAGTTTTTTCTGAATCATGGGTTCCATTTTTATCCATATCATTATCATAGTA
TTCTTCATCTCGTTCATAATCTTCTTTGTTATTTTGTTCATCTTCATCACCATTTTCATT
TTCATTTTGGTCAGGGTATTCAAATGGTTGAAAGTTTTCTTCATCGGCATCATCTTCTAA
ATGAGGCATAACATCATGCAACTCTTCTAGTTCCCCACTAGCTATATATTTTCTAAGAGA
AACATGTCCTTCAGTTATTGCTTTCTCAAGTTTAGACCCAGGTTCTACTCCAATTAATTT
TCCATAAATGAATATGGCGGATGGATTGATGTGTTCAAGTGGTATGGAGCCTGGGACTGA
TTCAACTAGAGCCTGGCTCAGGACTTCTGTAGAAGATTCTTCAGCACTAGGAGCATGATT
CCATTGGGCTTGGAAGTTTCGAGGAATAGGTTTACTATATGGAACTTTTTTAACTTTCTT
CTCAAATTCCATAGGAACAAATGTAGTATCTAAATCTAACCCAGGAATAACTTTATCTGT
ATCAGAGGAAAATATTTCTACTTTATCTTCAGGTCCCATACCAGGAATTGTAGTAGGTTC
TTCCAAGTCTTGATCATCTTGAACTCCGGGAGGTAAGGTATTCAAATTATATTTGTCTCT
CATAAGGTCACCTGGACGGTTCCGAGTCCAAAATTTAGAAGTATGGTCATTTGAACCTGA
GCACAATATATGACCCAGTGGATGCCAAGCCATTGTCCAGACAATAGATTCATGTGCTCC
TTCAATACAACCAACTTCTTTATCAGTACCTACATTCCAAAATAAAATAGCTCCATCAGA
TCCCCCAGAACAAAATAAGCCTTCATGATGTGGATGCCATGCCACACTGGAAGCTTCCTT
TTTGTGTCCTCTAAAAATTTGCAGTTCAGACCCTAGCTTACGTATGTCAAATAATTTAAG
TAAATGATCACGGGATGCAGTTATTAGCCAGTTACCATTATCATTCCACTTTAAGTCCAT
TACTGTAGATTTATGAGCATGAAGAGTTGACAATGCTGTCCCTGATTTTGGATCCCATAA
TTTAATAGGCTGTTGGTTGTCTTTACTGCCTGATACAATGAGTGCTTTAGTTGGATGCCA
TTGAACACATTTCACATCGGCACCATGACCTCTCAATATTCTTTCTTCTTGACATCTATA
GAAATCAAATATCCTGAGCGTGCCATCATCTGAACATGTTACTATTTTAGAATCACTAGG
GCTGAAACTGATTCCTCTTACAGCTTCTTTATGAGCTTGATACATTTTAACATTATTCAT
ATTACTCTGCCAGTATTTTATAAATCCTGAATGGTCTCCAGTTACCATCCAGCCTTCTCC
ATGTGACCAAACCATTGATCTTACTGGTGAGTCATGAGCTTGGAGAATGGTTTCAAAGTT
AAATGTTAATCCATTCCATAGTGTAAATTCTCCTGAGGAAGCACCTGTTATTAATCTTCT
ACCTTCAGGAGTCCATGCTACAGCAAAGATAGGACATCTCATTTTATTAGTGGCTGTTTT
AACAAAACGTGTTGTAACGGCATTTATTGGATTATCAGGATATGAAGGAGGAGGTAAAAG
GTCAGGGGTGTACATAGCGTCCGGTTGAAGCGCATGTCTATCGCGCCAGTCTCTTTGCCA
AACGCGGCATTCTAATGCTTTTATAATAGCCGCGTTATAATCTACAGTTTTACGCATTAC
TGATTTACGCAAACGTTTACCGTCGAAATCATCTTGTGTCATATTAAGAGGGCCCTGTGG
TGGAAATCGCATCTGGTAGTTGAAAGGTCTAAAGTTATGGCGAATGTTGTTCCGCCCCGG
TGGCGGGCCCATGGGTGGACCCATCATACCCATGCCCGGCGGGGGCATACCCATGTTCTG
GTGAGGATGTCCGAAATCCATGTTTTATTACTTGGATACCTTATCTTGATTTATATACTA
TAACATTGTCGATTGTTTCTTCACAGCAGCACAATACACACTTTGAAATTATTGTCAGGA
TTTTGTTATGTATATAAACAAACAGAAAACAAATTTCATTACATACAATAACCTCATTAA
AACGCTACCAAGCAAACAGC
(2360 bp)

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