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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp12895_c0_seq1
Scaffold_idBomo_Chr26
NCBI non-redundant
(nr)		retrovirus-related_gag-pol_polyprotein_[Lasius_niger]
Ontology
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
Transcript
Level		FPKM:1.85 TPM:1.86
ORF EntryO_BomoSK12266_5prime_partial:A_BomoSK_comp12895_c0_seq1
Sequence
(Nucleotide)
AGTACTCGGCTTCTGTGCTCGATAATGCAACGGTACGCTGTTTTCGTGCTTCCCAGGTAA
TTGGGGCACCTGCTAAAATAAATGCAAAACCGGAATATGACCTCGATCAATCGTATTTGC
ACCCCAGTCTGCATCAACTACACCAAACAATGGTACACCTGTCCTCTCATACATTAAGCC
GAAAGTTGATGTACCTTTCAAATACCTCAACACTCGCTTAGCTGCCTTCCAATGCTGTAC
ATCATAATTAGTGTTAAATTGGCTTAAATAATTTACAGTATAAGCTATATCCGGTCTGGT
AGATACAGCCAAATACATAAGGGCACCTATAAGGTTCTGGTAAGGGTACTGACTCATAAC
ATCATTGTTTACACTGTTGGGTTTTTCTAGTTTAACGTTCACATCCATAGGTGTTGATAT
AGGTTTACAATCACTCATACCATAACGCTCTAATACTTTATCTATATACGCACCTTGCTT
TAAATACACTCTATGCTCCTTATCACGTGAAAATTCGATACCCAAACAAGTACTGATTTT
TCCCATATCCTTCATTTCAAAGGCATTAGATAACTTACGCTTAACATCATGCAACCACAC
CTCATCATTAGTAGCTAGGATAATGTCATCTACATAAATAGCAATTAACATCATTTTTTC
ATCCCTTTGCGCAACAAACACACAAGGTTCTTGTGGTAATGCTTCAAAACCAATATTCTT
CAACCTTCCTACTAACTTTTTATGCCACTGTAATCCTGATTGACGCAAACCATACAAAGA
CTTCTTTAACAAACACACATTATTCTCACACTCATTCAATGCTTCGTTCCAGCGTTTAGC
TGTATGAAGTATATTCTTATCTCTTATAATATTTCTTTTTGATCCAATATTTTGGTTTGC
TAGTACACTTTCTAAGACATCTGATAGTTTATCTGGTATTTCCATGAATACATCTTCTTC
GAGAGTACCATTCAAGTAAGCTGTTACTACATCCATTTGATGCATCTCTAATCCTAACTC
AGCTGACACTGCAGCTATGAGTCTCACAGATGAAGACCTTACAACAGGAGAAGAGGTTTC
GTAAATATCCTCCCCTGGCCTTTGAGAACATCCCTTTGCGACAAGCCGTACTTTCTTCCC
TGTATTCTTTGTTTGAAATACAAATCTGCTACCAATCACTTTTCTATTTTTCGGTCGTGG
GACTATTTCCCATGTAACATTCTTTAATTGTGCCAAATACTCGTCTTCTAAAGCCCTTCG
CCATTCAGGTTCGTCATCAGTCTTTTCTATTTCTTTCCATGTTTTAGGTTCAATAATCGC
AATTCCAGCTGTTGTTTCTTCATTATCTACTTCATACTCTGATTCAGTTTCACTCTCTGT
ACTGATAGTAGCTGGTTTATACTCTTTGCGCGGTCTTCCCACTAAGCCAGTACGAACTAT
CCTTGGTCTTCCTCTCCCTCTCATGGGGTTTGTTTTTCGATTTTCCTTCTTCTGATCATG
TCCTATCAATTCAACGACTATCTTCGAATTATCAAAACTCTCTTCTTCATCATTTCGTAT
TTCTTTATACTCATGACAGAATGCTGTCTCGTTCATAAACTTCACATCGCGAGAAATGAC
GATCCTTCTAGTCTTAGGATCATGTATTCTGTAAGCTTTAGACTCAGTATCATAGCCCAT
AAATATTCCAAGCTCTGAACTTAATTCGAATTTTCCCTTCTGCGTTCCTTTGTTTTTATA
ATACGCTTTCGATCCAAACAAACGCATGTAGATTACGGTAGGTTTCTTTCTTTTCCACAG
GGTAAATGGTATTTGACCATCAAGAGCTGCAGTTGGGCACCGGTTCCTTATGTAATTAGC
AGTATTAATTGCTTCAGCCCAAAAAACAGGAGGGCTTCCCGCCTGACGCATCATACAACG
GGCCATCTCCAGCAGTGTCCTGTTCTTTCTCTCCGAAATCCCGTTCTGCTGAGGCGTATA
AGGTGCCGTCAACCTCCGTCTTATTCCTTCTTTCTTCAAGAAATCATCAAAGTCTTTGTT
AATATATTCTCGACCGTTATCGGATTGTAGATTTTTGATCTTCTTTCCTGTCAATTTTTC
CACGTAAGCCTTGTAATCTTTGAAAACTTGAAGTACGTCGCTTTTATTAGCAATAAAGTA
TACTTCACACCATCTTGATTTGTCGTCGATGAACGTGACAAAATACTTTTTACCGCCCAT
AGACTGTTGTCTCATTGGTCCGCACACATCTGTATGCACGATCTCCAATAGTTCACTGGT
ACGATCTTCGCTTCCTTTAGAAAAAGGCGTGCATGTCTGTTTTTCACTTATACATATTTC
ACACTCTGACAATTTTTCGTTGTCCTTCAATGATAGGCCATGAACAAGGCCATTTTTCGC
CATTGCCTTCAAATCACGCTCGTTAAGGTGGCCGAGGCGCTCGTGCCACATATCTATAGG
TTTTTTCACCATTTCAACATTATTGACATCATCTTGGCTCATTCGGACGTGGTATAAGTT
ACCAACTCG
(2529 bp)

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