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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp12885_c0_seq1
Scaffold_idBomo_Chr15
NCBI non-redundant
(nr)		PREDICTED:_116_kDa_U5_small_nuclear_ribonucleoprotein_component_[Amyelois_transitella]
Ontology
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0006412 P translation
GO:0008380 P RNA splicing
GO:0015030 C Cajal body
GO:0016020 C membrane
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:10.98 TPM:11.05
ORF EntryO_BomoSK12227_complete:A_BomoSK_comp12885_c0_seq1
Sequence
(Nucleotide)
AAATTTTATTAAATCAGAAATATAATTAATGAAGTTGTACGTCTTGTCTTGCCAGCTCCA
ACAACATAGGATCGTCGAAAAACTTATTGATGGACACGTCCTCACTGAGCCCCTTGCGTC
GACGGGTCTTGATCATGAACTCTCTGGCTAAATGCGTCGCTGGCTGTGGTTCCAATGGCC
TGATAACAATACTCTTGTCGAGCGGGTCGCCGGGCACGATCTGCCAGTGATGGAAGACCT
GCAGACAGAAGGCCTGGCCCTGCGTGTGCGTGCGCAGGTCGGTCTCGAAGCCGAACGAGT
CTATGGCCGGGACGAACGCTTTGATGGTGTAGAGCGGCGACCCGGGGACCGGAGCGTCCT
GGGTCACGTGACCTCTCCTCTTAGCCAGCACCGTGTAGACGGCGGATACGCAGTCGGCCG
GCGCTTGCACCTCAACAAACAGATACGGCTCCATCAGACGAGGGGTCGCCATTAGAAATG
CTGAATACGCCACGCGTCGCGCCGTGGGGATGATCTGTCCGCCGCCCCGGTGCAGCGGCT
CCTGCGCGATGACAGCATCCAGGATCTTGAATTTCACGTTCCTGATGGGCTCCTCACAGA
GCGGCCCTTCCCGCGTACCCCACTGGAAGCCTTGAACAATGCTATCCTTGACCGAAGCCA
GGAGATGCTTGTCCACTTCGGAGGGTAGAGTGTCATCGACTAGAATGTTGGGTCCCATCG
TGTCGGGACCGAAGGCCCAAATCGAACGGGCAGCCAGAAGATCCCAATCGTATTTCGTCT
GGAAGAATTCTCCTAGCCTCTTCCTGTCCCAGGACACGCAGACCGCGCCCGTCTCTATGT
CCTCGGCGAGACCCCGCTCCAGAGGTTCGGCGATCATCGTCAGTTTGTTCCTCTTGTTCG
GAGTCTCGGCGAAGCATTTCAACGACGACGTCTCGACTACAGTTTCGCAGAACGACACGA
CTGGATCAGCAACTTTGATATCAATCTCGGAGTACATATTCCTCAGATCGTGCATCACGC
AGTCCAAATATAGTTCACCGGTTCCCAATATCACGTGTTCCCCTGACTCCTCCACCCGGG
TCGACAGTAGTGGATACGACTTATTTACCTTTCTCAGCCCATCCAGCATCTTGGGTAGCT
CCGAGGGGTTGACCGGCTCGACGGCTATCTTGACGACGGCTTGAGTGTTGAACCGGAGCG
GAGTGAACGTGTGCAGCTCGCAGTCCTCCTCCGCCGACACGACGGTGCACGTCTTCACTA
TCGGCTGGTCGATGCCTTCTATGAGGGCCCAGCACCCGGCAGGTACGCGGTTCAGTTCCA
CTTTATATCTAGCCTCATATATCCAGAGCCTTCCGACGTTCATGATCCTGGAGTCCTCTT
CATCCTGGGAGCTGTAGTTTTCACCCAGGACTCGCACGGTCTGTCCGGCGTACAGCGTCC
CGCTCATGATACGCGCCAGTACCAGGAAGAAGCCGCAGTCGTCGGTGGGGTACATCTTGG
TGGTGTGCGCCACGAGCCGCGCGGACTGGTCGCAGTGCAGCATGTCTTGACGCAGCTCCC
CGCCGGCGCCGCGGTAGCAGTGCGCCACCTTGCGCGCCGCCGCGTCCAGTGGGGACGGCA
CGTGCCGGACCGCCATCTCCACGAACCCGCAGAAGTCGCCGAAGAACCTGCTGCACACGA
GGCGGAGTAGCGGACGCACGTTCAGTTTGGCTTCCTGCTTCGTTAACTTTATACCGAGTT
CTGTGAGCACAGCTGGCAGGGTGTCGTCCACGTCTCCCACCACTTGAGCAAAAATCTTGT
ACAGCGGCTCCAATATGAACTCCACGAAGCTTCTCTGAGCAGAGGCATGAGGTTGTTTCT
TCGTGAAGCGTCTAGTCTTCGCGTTGAAGTAGACATCGCCCCACAGCCAGCCCGCCATGT
CGGATGCCCGCAGTCCGCACGCAGGGTACGAGGCAGCGTACATCGCCGCAAACGATTCCA
GAGAGAAACACACGTCGTACAATGTTGACGCGAAGCAGACATTACCCAGAAGTGGTGAAA
ATACAATTGGAGGCTCATCAGGATTATCCTGAGGTTGATTGGTCTCCAGCATAGAATTCA
GCTCATCAATAATATGCCTGAGCTTATAATAGGCATCTGCAGGAGGTAATTTTAGCTCAA
GCATTAGCCTGTCTATTTTGTTGATGCAAAGAGTTAAATGAATTCTTTCTTGTACTGCAT
GACGTAACATTCGCTCCGTGTTGAGCATTATACCTTCAGCAGCGTCCACAAAGAGTACCG
CTCCATCCGATATCCGCAAAGCAGCAGTCACCTCATCACTGAAGTTCACGTGACCTGGAG
TATCCATGATATTCAATAAATGTGACTTTCCCTTTATATCCTTCAATAGCAATGTTACCG
GCATGGACTTTATCGACACTCCTCGCTCTTGCTCCACAAACAGAGTATCTGTATACCTTA
TAGGTATTGTTGTCTCATTGTTAATTGTTCCAGGATGTGTCTGTCTCATGAGACAGTCTA
CAAAAGATGTTTTTCCATTGTGCAAGTGGCCCATTAACGTAATATTTCTGATTAAGTTAG
TATTATCTAACATGTCAGCCATGTACTCCATGTCGTAGGTGGTCTCTGGTAGCTGCTGTT
CTTGAACCTGGAACTTCTTGTGTTTCACAGGCTCTACCAGGGGTTTGTCGAGAGCCTGTG
TATCTTCTTCTTGGACGACTGTCTCTACGTCGGGTCCATACACTTCTACAGCTTGAGGAT
AGTAACGTTTGTCCTCATGAAGAACGACGGACATAGGCGCAACTTCGGGCTCCGCGTCTG
CGTCCTCGTCCTCCTCCATTGCTTCCTCATCACCTTCACGATTATCCTGACCATATACAC
TCTGTTCGTCTTCAGAATCAGACTCCAAGTCTGGCCCGATGTAGTTTCCAAATTCGTCAT
ATAAATCTCCGTCCATTTTTAATATTGATAACTATATTTTGAAAATATTTCCGAAAAATA
ATTATCCAAAACAACTGCCGATGCTCTAAAG
(3031 bp)

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