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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp12829_c0_seq2
Scaffold_idBomo_Chr5
NCBI non-redundant
(nr)		PREDICTED:_uncharacterized_protein_LOC101747221_isoform_X3_[Bombyx_mori]
Ontology
GO:0001523 P retinoid metabolic process
GO:0002020 F protease binding
GO:0004872 F signaling receptor activity
GO:0005041 F low-density lipoprotein particle receptor activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005905 C clathrin-coated pit
GO:0005925 C focal adhesion
GO:0006897 P endocytosis
GO:0006898 P receptor-mediated endocytosis
GO:0007205 P protein kinase C-activating G protein-coupled receptor signaling pathway
GO:0007275 P multicellular organism development
GO:0007568 P aging
GO:0008283 P cell population proliferation
GO:0010875 P positive regulation of cholesterol efflux
GO:0010977 P negative regulation of neuron projection development
GO:0014912 P negative regulation of smooth muscle cell migration
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0021987 P cerebral cortex development
GO:0030136 C clathrin-coated vesicle
GO:0030178 P negative regulation of Wnt signaling pathway
GO:0030425 C dendrite
GO:0030666 C endocytic vesicle membrane
GO:0032370 P positive regulation of lipid transport
GO:0032374 P regulation of cholesterol transport
GO:0032403 F protein-containing complex binding
GO:0032429 P regulation of phospholipase A2 activity
GO:0032956 P regulation of actin cytoskeleton organization
GO:0034185 F apolipoprotein binding
GO:0035909 P aorta morphogenesis
GO:0042157 P lipoprotein metabolic process
GO:0042953 P lipoprotein transport
GO:0042954 F obsolete lipoprotein transporter activity
GO:0043025 C neuronal cell body
GO:0043235 C receptor complex
GO:0043277 P apoptotic cell clearance
GO:0043524 P negative regulation of neuron apoptotic process
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0051222 P positive regulation of protein transport
GO:0070325 F lipoprotein particle receptor binding
GO:0097242 P amyloid-beta clearance
GO:2000587 P negative regulation of platelet-derived growth factor receptor-beta signaling pathway
Transcript
Level		FPKM:50.83 TPM:51.13
ORF EntryO_BomoSK12072_complete:A_BomoSK_comp12829_c0_seq2
Sequence
(Nucleotide)
GAAACACGTCGTTAGTCGTTTGCCGCCAGTCTGCGCTCGCGCTGAGGCCGTATCGGCCGC
CATATTGAAACTCGTGCGTTGTCATGACAACCGCGTAAACAAGATACAATACATCGCAAA
AAAAATATATAAATTTTAATAAATAAAATAAGTGTGTGTGACTTCTTTCTTGTTTGTTTA
TTTTAATCTTTAATATCGTATTACATTTTGCATTCACATACAATGGAGAAGGATAAAATC
GTATTTAAGGGATCTCACCCAGACAGCCTGTACAGAGTTCCAGTTGACAGTGGAGTCGCA
CGTACTAAGATGACAAGAGTGGTACGAGTTATCCGATGGCCCGCTGCCCTTGTAGCCGTA
TGCGTCGCCTTAGCAGTCTTCGTGTACTTCCTTATGCCTGATACGATCGACATTGATGTA
GACTCTGTTAATGGAACTACTTGGGAAGCTGCGAGAGCACACAATAATGTATTACCTCAC
AAATTTGAAGAGAGTAAAGTCAAGAAGAATGACAATGATCGTGCTCAAACACAGGGAACG
AAACCATCCGAAATAGACTTTTACGATGCTGATAATGACAAGAGTTACGATATTACCGCT
ATAATTGATACAATTACGGAAACGGATCCTAAAAGGGTGCTGCCGGTTGCACCAATATTC
CCGAGTCATATCACTCCAGAGGTGCAATACGGGAATGAAAGGGTTGATAAAGATAAATTG
AGAACGCCGAAAGTAATTAACGAAACGAACACATTTCACGAAGACTCAACACTCAAACCA
CATATCACTCAAAAACCTGAAAAACCCTTAGAAGTATACTTTAGGGACGTCACCGCAATC
CCTACAACCACGGAATCTATCTTCAGAGCTGAAACGGTTAACGATTTTACGAATTACGAA
GAGAAACAAACCACGAAAAAGATCGAAGAAGCGTCTTCGAAACATCGCCCATCACTTTAC
AAACAAAACTTCGTTCAACTTCCAAACGGAGTACAAGATGTCGAAGCGTCATCCGAGATA
CCTCTCGAAGTGCAAGAATACTACGGCGAGCAACCGGTGAAATCTAATGTTAACTTTACG
TCTGGTCACTCGAAATTGTTCGGCATTTCTATGGAAGATGCGGAAAAAATTAAATCTACC
ACGCAAAGTTCAGTGTACAACACTAGGGTCTCACCCACGCTTCCGACTTGGCGGGATGGT
GACGACGCTACTACCAAAAAATATCCAACTAACATTAATTACGAAGTGCCGCAGTGTCAT
TCGACCCACATACCTCTGTGCCGTGGAGTGCTGCCCTACGACTTAGCAGGAAACGCAGCT
TCAGTCGGTGGAATAGAGATCACGGCCTTACTACCGCAGATAGAATACTTGGTGGCCACT
AACTGCAGCGACCGTGTGAGGCACTTTGTCTGCGCTCTACTCGAACCTGAATGCAACCCG
CCTCCGTATCCACCGAAATTGCCATGCTTTAATCTTTGCAAAGCTATCGTTGACAACTGT
GACGGGCTGATCCCCCGAGACCTATCCCCGGCGTTCAATTGTCAGCAATATTTCAAGAAC
AACTGTATAGCAGCCAAGACGCCGTGCTACCCGAGAGAGATGACCTGCGGCGACGGATCC
TGCATCCCGAGGGACTGGATCTGCGACGGGACCCGGGACTGCCTCAGCGGAGAAGACGAG
GCGACTTGCGTCCAATGCGACACCCGCGAGTTCCGGTGTCCGTCCGGGGGATGTATACAG
AAGCGTTGGCTCTGCGACGGGTACGCGGACTGCTCTAACGGGGAAGACGAGGACGTCGAG
GTGTGCGGCAGCCCCGTGGTGGCGGGCGAGGAGCCGGCCGGGTCCGCGCCCGCACCCGCC
GTGCGCAGACCGAACAGAATGCAGAATTCACACGGACGACAATACTCACACAATACAGGT
GAGAATGAAAGCAGCAAAGAGCTCTTGGTCACAAGCGACAGCAGCAACTCCCTCAAACGG
AATTTCACACGAAGACCCTCGCTGTCCCGACTGACGCCCTACAACCGAAATATGCCGCAT
ACAATCCAAACCAGACATAACAATACACAAACAACCACAGCTCCCGTCACCAAACACTCC
TCGCAAGACAACGAGAGAACAACACAGAACGCTGACGATGGAGATTCCGAGGAAGACGTG
AATGTCGGAGACCTCGGATTCTTCGAAGACCTGAAGAAAGAACCTAAAGAACAGCCCGCT
AAGCGGGTGATTGCGAAATCGCAGATGACCAAACCGAAGTCGTCTATAGAAAAAGACGCG
GGAGGCGGCGCCCCGGCCCCCACGCGACTCGATCAGTCCATCAGCAAACTGGAGAGGGTT
ATCAATGGAGCGGCTCTACTAAAGAAAGCGGAAGCCGAATCGAAATCGGAAAAGGCGGAA
GAGTTAGAAGAATCGCCTGAAATGAATAAGGGCGGGACGAGGAGTGACGATCTGCCGACC
GGACCGCGGGGAGGGTCGACCAGCGCGCATGTGTCGCCCTGTCCCACCGGGGAGTTACGC
TGCGTGGACGGGCGCTGCATCACGCTGGCCCAACTCTGCGACGGCACCATCGACTGCTCC
GACCACGCAGACGAAGACAACTGCTTCACGTGATCGTGAAGCCGCACCTCCGAAGGACTA
TCCAGACAGCCCACGTGTACGTCTTTACAAACTAAACAATTCATTCCTTAAATCCAATGT
ATTTAGGCAACTTAAATGAGGTCTAGTGTATCTTTTAACACGCACACGATATAATGGTCG
TGATGTCGAGATTTATATCTTGAATCAAATCTATGGCAGGTTTCTTTTGTGAAGGAACTT
TTGTAAGTGTTTGTTTCTCCAATTAGAGCTCCCATAGAGTTATCGTATTCTAGTGAAAAA
TAAACCTGTAGTTTTGTAATTTGTATGATCAAGATATTTTCGTATTATTCGGGAAAATTC
CTATGTTTTTTTGAGATTTTTTGGAAATTACACAGACCAAATCATGAGATTGATTCGAAT
AATCAAATCACGGAACGTATCTAATTGTCGTGAAGCTTTCTAGAGTTTTGGTTTGAAAGA
TAGTACCAATTTACGGCTTTGGTCTCGTATCTCAGCATGTATGGTAGCACCTAAGTTGGA
TATCATCTGTGAGCTCTGGTAACCCAGTTGACTCGACTTGAGCCATGAATTTCGTCGGTC
AAACTTAAAAAGTGTAAGTTGTCATGCTTTTTAATGTTGTCGATGTAGATGCGTGACCCA
TCATTAAATAAGAAGTTCGCCGCTCGTGGACACCGAAAATGCTATGGATACATTAAAAGC
GCTAGGGCTTAATCTTAGGTTTTTAACGATCTCGAAGGCAAACGAGCTTACGGACCACTT
CTTGGTGAGCTTATAACATCCATGGACATCAAAACACAGCGAAATGGCACCTGCCGCCAT
CGCAAGTTACAACGTTATCATTATATAAATAGTGATAAGGCTTTTGTGTGTTTGCATTGT
CAGTTACGTGAAAACACGAGAGAAAGAGACAAAAAACTTTGCATCGTGTTACTTATGGAA
AGGGCGATGCTTTATACTACCAAAAGTCGATGCTTCTATAGATTTTAATCTTGATATCGG
AAGCTTTTCTTCCGGAGCTATAAGCTTTTATACGAAGCATCTTCGCGTCACTATCGATTT
AAGCCTGTTTCGATAAGGTGCTTATTTTTGACTCTTTGAACTCTTTTTACTCTTTGAAAT
TCCGTCCATAAATATTATTAATTTTAGATGTAAGAAAGTAATCGTTTATTTCATTTTTAA
TAGAATCTCTTGAATGCTTTGAATACGCATTTGTAAATAGAAATATTATTGTATTCCAAA
CGTAAGCTTTTACGTAATATAATGCAAATTAATGTAAAAGTAAAGCTATTGAATTTACTA
GGTATTAAAATATAATGTTAAATAAATATAGTCTTTATGGTTTTTAAATGTAACATGAAC
TGCTGTTCTTTTAGTCATCATACAATTGAGAATTTTAAAATTTCAAATATTTAATTTCAA
AGTTTAATAATCGTAACTTAAATTGTATTTTGGTTGGAAAATAAACAAATCTACATTTTT
TTATTAATCGTGTAGCTATTTTGATTGACATATTATTAACGTAACTAAAAAACCTTGGAA
CTTTCCTCGCTACGTGTAAACGAAACTCTATTTCTATCGTGTTTAGGTTGTGTATTATTA
AACATGTTTAAGTTTTTACTTGTTAGCTATTATAATGATATTATAGATTTCCAAAGTAAA
TGTCATAATATTAGTTTTTAATTGAATTCGTTTGTAAGATTATTAACAAAATGTACTTAA
TGCAAAAATGGAAACTTCTAGAATTACTTCCACTGTATCGGTTTAGTTATAAATCAACTT
TGGTAAGTCGGTATCCACTGCCAACGTATTATTATTATCACGTAGTATTGTTTTTATAAT
GAGAATTTTATTGTAATTTATACTTTTATACTTCAATAAATTTAATGCCAT
(4491 bp)

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