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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp12760_c0_seq2
Scaffold_idBomo_Chr13
NCBI non-redundant
(nr)		PREDICTED:_CCR4-NOT_transcription_complex_subunit_7-like_[Amyelois_transitella]
Ontology
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000290 P deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000932 C P-body
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004532 F exoribonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0008284 P positive regulation of cell population proliferation
GO:0008285 P negative regulation of cell population proliferation
GO:0010629 P negative regulation of gene expression
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0030014 C CCR4-NOT complex
GO:0031047 P gene silencing by RNA
GO:0033962 P P-body assembly
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0061014 P positive regulation of mRNA catabolic process
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
Transcript
Level		FPKM:0.42 TPM:0.42
ORF EntryO_BomoSK11856_complete:A_BomoSK_comp12760_c0_seq2
Sequence
(Nucleotide)
GACGACTTCTATTCTTTGAAAAAAATTGTTGGTTCAAAGTATTACCAAACAAAGCAGAAA
TTGAAAAATAATTTTTAAAAAAATTAGCTACTCAATGAAACAAAAAAGGTGCCCATCAGG
AGAAAAGATGCCGGCGACCAGTTTCACCTCTTTACTGTGCAGTGCATTAAAAGAAGAGTG
CAGTATTAAAAACGTTTGGAATCATAATCTTCATGAAGAATTTCATGTAATAAGACAGGT
CAGAATTTAGAGTAAACAATATAAGTAGCTAGAGCTAGAGCTATGTAGAGGCTAGACATT
TAATAATTTAAGTATTTTATTTACTCATCAAAGGTCGATAATACAACATAGTTGATAGTA
TTATAAGAATACAATTAAAACTCAGTAAGTTCAGAAAATTACCAATTCTCTCTTATTATA
TTTCATATTATTTTAATGTCTGTAGCCTAATAGGTGAGACGTCTGATGTATTAGTATCAA
GCTATGCCTATGTCCAAAATTACCTATGTGGTTTTATGATGGAGAAAAACTAGGGGGTGA
TAAAAGTGTAACTAGTGTATTTATAAGTTCACATAATTACTGGTGGTGATCGATTTATAG
AAACTACAATGGAAAAAAATTATATCAAATAGAAGTTATTTGCAGGCCGATAGTCTTACA
GTTATCATTCTGTTAGCCCAACAACCAATATGGTGAAATCAGAATACACCATAGAGGCTA
CTAGTAATTAGGTAGAAAAAAAAATCATAATGCACTTTTAGATGTTGATAGCACTACCAA
ACATATAGTGAGCCATGTGATCCAGTATAGCACTCTATCATTTAGAAAAATTTAGCACTG
GCCTATGGGATTCAAACACCATTAAAGTCAAATCTCTCGATATGAATGCACTAGGTACCT
TATATTGGAGGCCATGTTGATTTTTAAAAATATAGGCTGTGTGGTGTCCTACAATAACAC
AGCCCAATCTCTTCATGTGGGTGTTATAAAAGCAAGTCACAGGAGAATATGCAGCAGCAT
TATCAGTTTAGTATATCACCATACTGTGATTTCCAACCTGTATTTGCTGGTAGTAAGGGG
TAATGTAAGCTGTCATTTTCCACCAACCTTCCTGTTTCTAAAATAAAATAGTCATACATT
TTTGTTTAAAGCGTGAAATAGCCACAATAGAGTTATGCCTTCAATTATATGCTTAAATTG
GGGCTGGTCCAAATTTAAATGGTAATGTTTATGGGCTCTGGTAACTCCTTTACACAATGG
TAATAAACAGGTTGTCCAGAAATACCATTGGGTGGCCATGGATACTGAATTTCCAGGTGT
AGTTGCAAGACCAATTGGTGAATTCAGATCCACTGCAGATTATCAATACCAGCTTTTAAG
ATGCAATGTGGATCTGTTGCGGATCATACAATTAGGATTAACGTTTATGGACGAAAATGC
TAAAACTCCCCCAGGGTGCACAACTTGGCAGTTTAATTTTAAATTCAATCTTCAGGAGGA
TATGTATGCACAAGACTCGATAGACTTACTACAAAATTCTGGTCTGCAATTCAGGGAACA
TGAAGAACATGGTATTGAACCCCTTGAATTTGCTGAATTACTAATGTCATCTGGAATTGT
ACTAATGGATAACATCAACTGGTTGAGTTTTCATTCTGGATATGATTTTGGTTATTTACT
TAAGTTGCTTACTGATCAAAACCTACCTCATGAAGAGAATGACTTCTTTGAACGATTGCG
TCTATATTTCCCCACCGTGTATGATGTCAAGTACCTGATGAAACTTTGCAAGAATCTTAA
AGGTGGCTTACAAGAAGTTGCAGATCAGTTGGAATTGAGGCGAGTAGGTCCCCAACATCA
AGCCGGTTCTGACTCACTACTGACTGGCATGGCGTTTTTTAAAATTAAAGAAATATTTTT
TGATGGAAACATTGAAAGTACGAGTGGACATCTGTACGGACTTGGAGCTCCATTCACTAC
TAACGCCAACAACTTCCAGGATAACGTGGATAGTGGAAACTCATCTTGATCTGAACTGCC
TTGCTAAAGAGTTTAACTCAGTAGTCACTTCTGTTTCATACCAAGGAATAGAAATAAATA
ACAATTTGTACCTGATTAACTTTGAAGAAATAAGCTTAGTCTAAACTGTGATAAATGTTA
GTGTAGTTTTGTCTTCGTGGTAGTTTAATGACTGAATAAAGAGG
(2204 bp)

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