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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp12698_c0_seq6
Scaffold_idBomo_Chr3
NCBI non-redundant
(nr)		PREDICTED:_U5_small_nuclear_ribonucleoprotein_40_kDa_protein_isoform_X2_[Amyelois_transitella]
Ontology
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000398 P mRNA splicing, via spliceosome
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0005732 C sno(s)RNA-containing ribonucleoprotein complex
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:6.14 TPM:6.17
ORF EntryO_BomoSK11682_complete:A_BomoSK_comp12698_c0_seq6
Sequence
(Nucleotide)
CATTTACCTACATACCTACCTACCTACCATGTACCTACCTAATTACATATTATAATTGAA
TAAAACTATCCAATTATGATTGTTTGCAAGTTCTTCCAGCAAGGCTACTGCCGATACGGC
CAAAATTGTAGATTTGAACATGTTTACGGTTCCAAATACACATATCATGCAACAACTCCA
CAGCCGGTGGTGACTAACACGGAGCACACTGATGAACAACTTGTGAATCAAGTACAGACA
GATGTTAAATCAGTACTACACGGAAGCCAATGGATACTCTCGTGTTATGCACCCTACAAG
GAGAAGCCGATAATTCCGGGAATTCATGATCTATCACCAGAGGAAATGAGGCTTTTTATA
TATGAATCGAAAAGAAATAATACTTTAGAACAAGCTATTGCTTACATTAACAACTTAACT
AGAGAAACAAGACAGAAATATGAACAATTGCTACAACCAACACCACATTTGATCAAAGTT
CTACGATCGATAATGCAATATAAAGAAGGGCAGACTGTGCTGTCTCCTTTCACAGCGACA
CAATCCGGCAGTGGTGCGGCCACTTCAGTATTCAGGAGTGCAGTCCAAAGTTCTGTTTTC
ACTCAGAACAATCCAACACCTTCAATTTTCTCACAAAACAACCCACAAAACATGTTTGAT
AATGGAGCTACAAATAATATGTTTGCACAAAACAGTACACAGTTAGGAATAACGGATGCC
GGAGCAAAATCAATATTTGCTCAGGCCAATCAGAATGTATTTGCACAAAATCAAACCAAT
GTGTTCAGTAATACCAATCAAAACTTACAAAATCCTTCCAACATCTTTGCTAGTGCAAAT
CAGAATTTGTTTAAACAGAACGACACTCAAGGTTCACCATTTCAATTGAATATCTCGCAG
CAAAATATGGATACTAATACCTTCCAAAAGTCAAATACACAACAATCAATTTTTGGACAA
AACGTGCCTTCAGTAGAACAGAGTGGTGTTTATAGTAAAATGGAAGAGCTCACACCAGAC
GATTTGGAAGCATTTAAAAGTGACAAGTTTCAGTTAGGTTTTGTACCTGAAATAGCACCA
CCCCAAGAGTTATGTAACAATTGAAACGTGTATAAACAACATTATGAGTTGACATTAATG
AGTATTTCCAAAATTCCAACAGACTGGAGTTAGGTAGTCTTGTGACCTTGCACGGGCAGG
TCCTACCATTTAGGCTGTGAAGTAGTTATGTACTCTAGTTTGAAGGATAAGACACTGGTT
ATGCTACAGTTGAGACTTAGGCCTCATGTCTCAAACTGGATTATCACATTAACATTGCGT
TGTCTATGTTCTGATAACAATTTAACACTAGACCACGAGTTTGATTACTAATCTAAGGTA
CAAATAAAAAAGTGTTAATAGGAATGGCCTTACATTGCCCCTTGTTCAGCCCCTTACATT
GACAGTCAGTGGCATATTTATTGCCATTTAAGATATTGATTAAATACAAAATCAAGCATT
AACATTTGAACAGAACAGTGATAGTAGGGAATACTTTAGAACTTCAACAGAATGCATACA
ATCCAATGTATCTCGTATTTGTATACTATTCACAGATCTCAACACTGCACAATAAAAGAC
AAATTTTGCTTATAAATTAAATGTATTCCTATATTACATTTTACATATTTATATCGCTTC
AGTATTACAGTTAAATGTGGAATAATAATGATGTATGTGCATCTCTGGTTCCTGTCATTG
CTACCAAATTTAATTACCAATGTGAAATTGAGTAGATTTTGCATTTAATCGAACAATCAA
CTACAAAAATATATATGCACTGATAATGTAATTTTAGAAAATCTTTTAAATACATTAAAC
CCACTTTTATTTTATATTCTAGTGTAAAGGTAAATTATTTCTAATGTTAAATGTTCTATT
TGGACTTAAGTGTTTTTTATTACAGTCAGTTTAAGTTTCATTTTAATACATTTAATGTTT
TTTTTTTTTGGCTTTATGAGTTTCCGGATCACCTGAAGTAAAACATTACCAAAGCCCATG
TAAATGTTTTATCCTGCTTGAGACATGAGGCGGTTTTCACAATTGTATAGTAAGACTGAT
ATCCACCCTGCAAACCAAAATAACCTGCCAACAGTAATACGAACACATTGTCATTGATCT
TTTATACACTTTTAGTAAATTAATATTGTTTTGTTTGTCTCCACACCCTGTAGATTTCCA
ATAATCACGACCAAATTGCATTCATTATTATTTTATGTACTTGCTTAAGATCATCAAACT
CAAGACAGGAAATTGTGTAACTAAAAATTTAAAAGTAAAATCAGTCCTCAATTTTCAATT
TCTCCCAAATAAATCTGTTTATCGCTGGACACTGATAACACTATGGGTTCGTTTGGATGA
AAGTCCACATCATTGACGGATCCTATGTGTCCAGGCAATTTGTAAAGAACTCTTCTGGAT
GTTGTGTCCCAAACGTATAGGAAACGATCTGAAGAACCTGCTGACACCTTGGAGCCATCC
TGAGACCATGCACATCTGAGCAGATTTTTCTCAAAGTTGTGTTGGTGGCCAGACATTAAT
TTGACACAGCGTTCTGTTGGTGCAAACGGTCTAACGTCCCAAATACGGAGTGTATTATCC
ATTGAATTGGACAGGAGATATGCACCATCCCATGACAATGATAATCCTGTAACCGTGTCT
GTATGTCCTTTTATTTTCAAGGAAATCTGATTATTCCTTATATCCCACATTTTGATGACA
TTGTCCACACCGCTGGATAAAATTTTTTCAGCTGTATCATTGAAGAGTACACTTGTGACT
GGATATGAACTGTCAAACGATGCAACTGGATTCCTTTTCCTTGCATCCCATAATTTTATG
GTGTTATCATCTGAAGCTGAAACTAAGAGTTCTGGACCTCTTCTTGCTCCTGAAACAGAG
TTCACAAAGTTAGCGTGACCCTTTAACTTCTTGATTCTAGTCCCGGTGGGTACGTCCCAT
ACTGCTACAGTATTGTCCGTAGCTCCAGTGTACAAATGTGAACCATCAGGTGAGAAGCAA
AGCTGCATTATTGCTCCCGTGTGACCTTTCATCACCATCACATTCTCGCATTGACCATAC
ACATTCCATATTAATATTTGTCTGTCAAAGCCTGCAGAAGCCAAATGTTTGCCTTCAGGA
TGAAATTTGCCTGTGAAAATTTCTCCTTGGTGTCCTTCCAACAACATAATTGGCGCATAC
AAGTTTGATGTTCGTGGAACAGATGAAGTAACAACTGCCTTTTCTCTGGTGCCGACTACT
GAGATCTCATGCCGTACTCGCTTGGAGGGTACAAGAGACACATCCTCTGCTTTTCTTTTA
GTTTCTATATCTGGCATTTTTTAAGATGTTTATTTACCTATTTGTTTTTATAGCTACAAA
CAGAAATACTAACCTTAAAAATGGTATAAGGAC
(3453 bp)

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