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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp12697_c0_seq1
Scaffold_idBomo_Chr15
NCBI non-redundant
(nr)		cryptochrome_2_[Bombyx_mori]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0000976 F transcription cis-regulatory region binding
GO:0000989 F obsolete transcription factor activity, transcription factor binding
GO:0003677 F DNA binding
GO:0003684 F damaged DNA binding
GO:0003697 F single-stranded DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006606 P protein import into nucleus
GO:0007165 P signal transduction
GO:0007623 P circadian rhythm
GO:0009881 F photoreceptor activity
GO:0018298 P protein-chromophore linkage
GO:0019900 F kinase binding
GO:0019901 F protein kinase binding
GO:0019902 F phosphatase binding
GO:0019915 P lipid storage
GO:0032515 P negative regulation of phosphoprotein phosphatase activity
GO:0032868 P response to insulin
GO:0032922 P circadian regulation of gene expression
GO:0035257 F nuclear receptor binding
GO:0042593 P glucose homeostasis
GO:0042752 P regulation of circadian rhythm
GO:0042754 P negative regulation of circadian rhythm
GO:0043130 F ubiquitin binding
GO:0043153 P entrainment of circadian clock by photoperiod
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0048511 P rhythmic process
GO:0050896 P response to stimulus
GO:0071949 F FAD binding
GO:2000323 P negative regulation of glucocorticoid receptor signaling pathway
GO:2000850 P negative regulation of glucocorticoid secretion
Transcript
Level		FPKM:6.69 TPM:6.73
ORF EntryO_BomoSK11670_5prime_partial:A_BomoSK_comp12697_c0_seq1
Sequence
(Nucleotide)
ATACGGCCTACCGGAGGGTAAGTGGTTCCCGTCACCAATGGATTCCACAAGTACCAAAGC
CAGACCCAAGCCGCTGCCTACCGCATGCTTAAAAAACACCAATTTGTTTAATGGTTTGCT
TGCTCTTTCTCGAACATAGAGATGATTATTTGTGGCTTAATAAGCTTAATAAGGCGGACA
GACATTTGGAGAATCGTTCGAGCCTGTTCTTAAAGCAGTTAAATATTGGTGATGATGCAA
CATCTTCGGACGCTCTGCTCTATGTTGCTATTGCCGGTCCAGAAATTTAACAATATTATT
ATAATTTTGTGTTATTCACTACAAATTGAAATATAAACTTGTATACATAAACTAGTTCAT
AGTACTACTAGTTCTTACATAATATTTAAATGTACATTTTAAAAACATCTAATTTACGTT
TCCTATCACTAAGTATGTTCAGAACGAAATCATTAAAAAAAAACTATCAAAATATTTTAA
ATAAATCACACCAAAAAAATCAACCTAAAATATTCAAAGTTGTAGTGATAGATACAGATT
TCAGAGCTTTTCTGGGTTCCGTGATCTAATAACAAAAACCCAAAGGTATAACTTTTCCTG
TGTGTTTTTCCGAATGTCATGAATTCATTTATTTAGGCGATTATCGGCCCTATAACTGAT
AAACTTTTGAAGGCTCTATACCCCTACGAGAAGCATCTGAATAAAAAACACAGGTGGTAA
AAGAATTTTATCAAAAATGCTTTTAAGGATTCTACTCTTTGAGATGCCAGGTATTTGAAA
TGTAAAAATGTATGTAATAAATGTTTCACGTATCTCACCTAGTCGCAGTGAACGTTTTTA
ATTTAAAAAAAACTTTATGTATTGTTTGTTTTGTGTATATCTTTATTTATTTTGTATAAT
ATTTTTTATTTATTCCAAAACGATTTTTTTTTCCAAGTTTTATTGTTTTAGATTTTCTTT
GGGCGTTTCAAATTCTTTTTCATTTGACATGGAAGGGCAACGGTTGATTGTGTAAGCCCT
GTCTGTGCCATAACTTTCCGGGCGCACAAATGGACCTTCGTCTGTTTCATTTTTTATTTC
AGTTTCTTTCTTCTTAGTAGAATAATTAGTTAAATAATATTGAGAATTTATATTTTGAAT
GTTATTAAACCCTCGGATATGATTGTCGATAGCCAAATTTTTGAAATCGTAATTATTTTC
TTGTTTTTTTGCGTCTGTACTGTGTGCAGGATCTCCCTCATTAATCGTGATATAATTATC
TGAAGCTCTCCGATCTTGTGGAGCGGATACATTAATTTCCACATTAGAATTGCGTGTTTT
TTGCACGATAATTACTCGTTTGTAGCGAGTTTGGTTCGATTCGGTATCTTTGTTTTTTTT
GTTTATTGGGAATGTGTCTGACGGCTCTTTGAACGAATGCGATGTAGCGTTTTGTGGATC
CGGAGTTTGGCTGCACAAGAAGTTGGACTGGTTGATGCTGGCGATTATTGATGTCGGACT
TGGCGACGACTGCAACACGTTGGGTCGCTGGACTGCATTAGCATTTAGCGTAGCTTGAGG
CTTATATCGGGCGAGTTGTGCGTAGACCTGTTTGATCCGTTCGATATTTATCTGCGAGGC
CTTGGTGTGGTCGACCATCGGCATGGGGTAGTCACGTCCGATGCTGCACTGGGCGGCCGC
CTGCACAGACTCCGGGGCCATCCACGGCTCGTGTATGTAGCGCGTTGGCATGTTCTTCAG
AGCCGGTATGTATTTCCTTATGAAATCACCATTAGGGTCGGTTTTCCTTCCAAAACGCAC
AGGGCAGTAACAGTGGAAAAATTGTTG
(1827 bp)

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