SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp12567_c0_seq5
Scaffold_idBomo_Chr15
NCBI non-redundant
(nr)		PREDICTED:_RNA-binding_protein_1-like_isoform_X2_[Amyelois_transitella]
Ontology
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035327 C euchromatin
GO:0045292 P mRNA cis splicing, via spliceosome
Transcript
Level		FPKM:35.70 TPM:35.91
ORF EntryO_BomoSK11289_complete:A_BomoSK_comp12567_c0_seq5
Sequence
(Nucleotide)
GAATTCGAAGACCCCCGTGATGCGGTATTCATCCGTCAAACGTGGAGACGAAAGGTTGTG
GCGAGCAATAAAAAATTAAATTTAGTGAAATATTGTGAATAATTTTTATCCACCCTTTTC
AATCAAAACTAAGATGTCTCGCTACAGAGAATGGGATCTTTCTTGCAAAGTGTACGTGGG
CAACTTGGGTACTAATGCGTCTAAATATGAAATAGAAAAAATATTTTCTAAATACGGTAA
CATACGTAACGTATGGGTAGCTCGAAATCCGCCCGGATTTGCATTTGTAGAATTCGAAGA
CCCCCGTGATGCTGAAGACTCTGTTCGTGGACTTGATGGAACACGCTGCTGTGGCACCAG
GATTCGTGTCGAAATGTCAAATGGTCGCACAAGGAGAGACCGCAGCAGGTCACGCAGTCG
TAGTCCCCGCCGCCGATCATACTCTCGCGGCCGGTCAATGTCTCCACGACGGTCGCCTTC
AGTTCGCCGTCGCTCTCCTTCTCCCCGCCGTTCACGATCACGCGACCGTCGCAGTCGTTC
TGACAGCAAAACCAGGTATTGAGAAGTTGTGCAGATTTTAGAAGAACAATGTGAAAGACT
TATAGTTTTAAGCGTGTACATGTGAAAATGCGTGTGGAGTAATTTGTATACTATTGCTAA
TAATAATGCAACCTGCATTAGCTGTCTTTGAAAACATAAGTCTAAAACTTTTATAAGTGT
TTAGATCACTCACTTCATTAATTTTAAGGAATTAAAATACATATTTTACTTCATAGATAT
TATTAAGATGACTTAAATATAATTTTGATGTAAAAAAAAAAA
(822 bp)

- SilkBase 1999-2023 -