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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp12512_c0_seq1
Scaffold_idBomo_Chr24
NCBI non-redundant
(nr)		PREDICTED:_LOW_QUALITY_PROTEIN:_E3_ubiquitin-protein_ligase_RFWD2-like_[Plutella_xylostella]
Ontology
GO:0000139 C Golgi membrane
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005829 C cytosol
GO:0005925 C focal adhesion
GO:0008270 F zinc ion binding
GO:0010212 P response to ionizing radiation
GO:0016567 P protein ubiquitination
GO:0016607 C nuclear speck
GO:0016874 F ligase activity
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
Transcript
Level		FPKM:5.59 TPM:5.63
ORF EntryO_BomoSK11059_5prime_partial:A_BomoSK_comp12512_c0_seq1
Sequence
(Nucleotide)
GAGCCGCGGGCCCGGCCGGCGAGGGAGCCCGGCTGCGCTCGCTGCTCGCCGCGGAGTCGC
GACACCTCGACCTCACCGAGGTGGATTCCATGTTGGAACTGCTCAACAGACGGAAGAGAC
TGCTGGAGGCGGAGTGCGCGGCGGCGCAGCACCGGCTACTGTACGAGTTCCTGGCGCACC
TGCACCGCCACCGCACCCACCAGCTGCAGCAGCTCGCCAGGGAGGCCGCCCTCGTGCACA
AGGACATGGAGTACGTCGCCGGAGTGCTGAAGGAACTCCGCACGGGTGCAGTGGGGATAG
CGCGCGGGGCCTCGCCCCCCGGCGGCGCGGACCCCCGCCCAGACGCCGTCACTGCGCTCA
GGAAAGAGATCGCCGATATAGCCGGGAACCTCGCAGACACGGCCAGCAATGTTGACGGTA
GCGCGGGCGCGGTGTGCTCGGAGGAGGAGAGCTTCGCGGGCGGCGCGGGGGGCGGGGGGG
ACGCCCTGGCCGCGCGCTGGAGGAAGCTCACGCAACACTTCGACGACTTCGTGCAGTGTT
ACTTCGCGCACCGCGCTGACGAGCTGTACTTCCCGGGGTCGGGGTCGCTGCCCCCCGCGT
CCCCCGCCGTCCCCGCCTACCCCGCACCCCCCACCGTGACCCCCGTGCCCTCCTCGGCGG
CCCCGTACACGTGCGAGGCGGACCACGTGCCGCAGGGTCCGGTGTGCGACCCGCAACCAA
CTCCTGCACCGGGTCCGTCGGACCAGCGGGCGCCGGTGGCGGGCGTGGCGGTCGAGGACT
CCGTGGAGATGGAGGAGGCCGGCTCCACTCGAGCCCGCGCCGGACTCGACGCCTTCCGGG
ACGACCTGGTCGCTTTCACCGCCTACAGGACGCTACGGCCGCTGGCCACGCTGTCGTACT
GCAGCGACGCCATCAACTACTCCACGATCGTGTCCACCATCGAGTTCGACAAGGACGAGG
AGTTCTTCGCGATCGCCGGCGTCACCAAGAGGATCAAGGTGTTCGAGTTCGAGTCGGTGG
TGCGCGACGCGGTGGACGTGCACTACCCGTGCGCAGAGATGCAGTGCTCGCACAAGATCT
CGTGCGTGTCGTGGAACAAGTACCACAAGCACGTGCTGGCGTCGTCGGACTACGAGGGCA
CGGTGTCGGTGTGGGACGCGGGCACGGCGGTGCGCACGCGCGCGCTGCAGGAGCACGACA
AGCGCGCCTGGTCCGTGCACTTCAACCGCGCCGACGTGCGCCTGCTGGCCTCGGGCTCCG
ACGACGCGCGCGTCAAGCTGTGGGCGCTCAACCAGGAGAAGTCCGTCGCCACGCTCGAGG
CCAAGTTCAACGTGTGCTGCGTGCGCTTCAACCCCAACTCGTCCTGCCACCTGGCCTTCG
GCTCCGCAGACCACTGCGTGCACTACTACGACCTGCGCTCGCCGCGCGCGCCGCTGGCCG
TGTTCCGGGACCACCGCAAGGCGGTCTCGTACGTGAAGTTCCTGGACGGCGGCACGCTGG
TGTCCGCCTCCACGGACTCGCAGCTCAAGCTGTGGCGCGTGGAGTCCCCGCGCTGCGTGC
GCTCCTTCACCGGACACACCAACGAGAAGAACTTTGTGGGGCTGGCCACCGACGGCCGCT
ACGTGGCGTGCGGCTCGGAGAACAACGCGCTCTACGTGTACCACAGCGGCCTGGCGCGCC
CCTGCCTCGCCTACAGGTTCGACCCCGCGCGCCCCCTCCTCGAGCGCGACCGCCGCGACG
AGGAGCCCGCAGAGTTCGTCTCCGCCGTCTGCTGGAGGAGGGCGGCCTCCCGCCCCGCCC
TCCTCGCCGCCAACAGCCACGGCACCATCAAGGTCCTCGAGCTCGTCTGACAACCCCTCC
CCCCAACCCCCTCCTACCTGCGGGAGAGAGCCCACACCGGAGAAAAAACCCTGAAAACTA
TTTACATTAATTTTTTACAATCCGTATTATTCACAAATTAGTTTACAATCCGGGATTGTA
TTGAACCGGGAATCTGCAATCTTCGTTAACAGGCGGAAATGATAAAATGTAGTTATTCTC
AAGTAAGATTATTTAAAGTAAAATCGAATACACATTCAAGATATAATGCACCGTGTGCTC
ATAGATGTAAAGAGTAAAATTGTGCACGGGTCAGTTCCCTCGGCAGCCCTCCCTCCCGCA
CCCCCGCTCCCGCCCCGCGCGCGACAGAGACACCCAACAGTTAGTTTATGAAGTTTTAAT
TTTAATGAAAATTATAGATGTTAATCAGTGAAGTCGTTTTGTATTTGTGTGTGTGTATGT
AAACATGAGCCCTATGTGAACGGAAT
(2306 bp)

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