SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp12469_c0_seq1
Scaffold_idBomo_Scaf008
NCBI non-redundant
(nr)		PREDICTED:_probable_ATP-dependent_RNA_helicase_DDX28_[Plutella_xylostella]
Ontology
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
GO:0019843 F rRNA binding
GO:0035770 C ribonucleoprotein granule
GO:0042254 P ribosome biogenesis
GO:0042645 C mitochondrial nucleoid
GO:0044822 F RNA binding
GO:1902775 P mitochondrial large ribosomal subunit assembly
Transcript
Level		FPKM:4.89 TPM:4.92
ORF EntryO_BomoSK10977_complete:A_BomoSK_comp12469_c0_seq1
Sequence
(Nucleotide)
GTGACATTATGTGACATAACCTTAAAATAACAAACAATGTTAGTATTTTTAAATTTTAAT
TAAATTTATCAAATAACAGGAACAATAACAGATAGGAACAATGTCTAAATTACGTCAATT
AATTAGCACATCTTATAGTCGTTATTATAGCCTCCAGCAGGCTAAGAAAAAATTACCTAT
TATAACATGCAAGCGACCGGAATTCAATCACTACGAAGGACAGAGTTATAGCAAGTATGA
AGGTATAAAACTAGCTTCGCAGGGGTGGCTACACAATAAATCAAAGGGAGACTATTTCAT
CATACACGGGAATGCAAATAAAAAAGAAGAAACACCCGTGTATAGGAAGACTTTTGAAGA
TATCGGCTTGAAAGATAATTTGGTTAAAGTTGTCAAAGATTTAGGGTTTACGCTGCCCAC
GGCCATACAAACAAAGGCTGTACCCGCCATTCTCAATGGACACAATACGGTAATCACAGC
GGAGACGGGCTGCGGGAAGACCTTAGCGTATTTGTTACCTATAATTCAACATATACTGGA
ATGGAAGCCAAGTATTCAAGAAGAATTTAATAGTCCATTGGCTGTTGTTATTACACCGAA
CAGAGAACTAGCTCTACAAATAGGAGAAGTGGCTCAAACAATAGCACAAAGCATAAACAT
AAATGTCACGACTTTAATAGGAGGCAAAACGAAAAAAAAAATGTTAAACCCTCCAATTGA
GCACAGTGACATATTAATCACAACGCTCGGAGCTTACAGTAAACTAGTCACAACTGGAAT
ATACAAGATTCACAATGTGCATCATATTGTGCTGGATGAAGCAGATTCCCTTTTGGATGA
CACATTTATTGATAAAGTCACATATCTGTTGAAGAAATTTTCGATACAATATAAAGTTGA
TATTCAAGTCCCTCCCACAGGTTGTCAGTTGACTTTAGTTAGTGCAACACTACCTAGGGA
CCTTCCGGAAACTGTCAATAGTTTTGTAGCGGCTGAATCACTGAAAATGGTTAGAACTTC
AAATATACATCGGATATTACCACATGTGCCGCAGAAATTCTTACGTCTCGGGAAGGCGCA
CAAGCCCGCGGAACTCCTCAAACTTGTCCAAGCGGATCAGAACGAGAGGAGACCGGTCAT
GATCTTCAGCAATCAGACGTCTGGCTGCGACTTCGTGTCCATGTTCCTGAACGAGAACAA
CGTTGAATGCATCAACATCAACGGCCAGATGCCGGTACAGCTGAAGTTGGGGAAGTTTGA
AATGTTCAGATCCGGGAAAGTTAATGTCATTTCGTGTACTGATATCGTTTCCCGAGGATT
GGACACTACTAGGACGCACCACGTAATTAATTACGATTTCCCTCTGCACACGTCTGACTA
CATCCACCGGTGCGGGCGCGCGGGCCGGCTGGGCTCCCCGCCCGGATCCCACGTCACAAG
CTTCGTGGCCTGGCCCCGCGAAGTCGAGCTGGTCCAGAAGATCGAGACCTCGGTCAGGAC
AAACTCTGACCTGCCCCACGTTAACGCCAACATCAAGCGGGTCATACGAGACAGGATTGT
CAGGATGAGCGGGGCTCTTGCTAGGGCAAGTTGAGGAGGAGTCGGTGTTGCCAGCCGCCG
TCGGTGTAAAAAAAATGTAAACTTATAAACGCTTCACTTTCCCCCCTTAGCCTGTCGTGA
GTTCTGTCTCAAGCGAGGTTCGGACTTCGGTTGTTGAGCAAAAAAAAGTGGATCGGATCG
AGATTTAAGCATTTTCAAAACACAATTAGTTACATTTAATTCTATAGAAGCATTGCCAAT
TATAAAAAAAATGTCCTAGAAAAAGCTTGAATGACTTTGAGCTAATCACACATTGAAACC
GAATGTCGTTCGGACATAATTGATTGTCAGGTGACTCAGCTATGTAAATTTCACGGATAT
ACAGATAAGCCTTCTATAACACGGTAGATACGTTCCTACAAAGTCCCGTGTTGGGCGAAA
CCGCGTTATATGAGACTAGAAGTCAGTACAAAAAAGAGAGTAATTTTTCTGAATAAAACA
TCTCAACTATGCCTGTATG
(2059 bp)

- SilkBase 1999-2023 -