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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp12446_c0_seq1
Scaffold_idBomo_Chr15
NCBI non-redundant
(nr)		PREDICTED:_probable_ATP-dependent_RNA_helicase_DDX23_[Amyelois_transitella]
Ontology
GO:0000166 F nucleotide binding
GO:0000354 P cis assembly of pre-catalytic spliceosome
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0005730 C nucleolus
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:10.62 TPM:10.68
ORF EntryO_BomoSK10935_complete:A_BomoSK_comp12446_c0_seq1
Sequence
(Nucleotide)
TCTCGAAATATATACGAATTTTAGTTAAAATTACATTCTTTTGATTCTAAAAGTGGATGT
TTAAAATGTGTTAGAACTAAAGTAACTATAGACTTTATAACTTGCTGGTGACCATGATGG
TAATTTACCTATTGCTTATTATTTTAGACTATAACTAGGATTGTCAAGCGAATATCATCT
CTTCACGTCTCTTCTTTGTTACGACTGTCCCTGGCTTATGTTGAGCCTCAGGGTGGTTCA
TAAGTTCCGGTGGACACGTAGATACGGAACTTGCCAACAAAACCTGCTTCAGATCATAGA
ACAATGCGGAGTCTTCTTTTGTAACAAAGGACATAGCTTTACCAGTTTTTCCTGCACGAC
CGGTACGGCCGATACGATGAGTGTAGTCTTCAATAGTCTTCGCCATATCGTAATTAATGA
CCATACTGACATCTTTAATGTCAATACCACGACCTGCCACGTCTGTCGCCACGAGGATAT
CTTTAGCGCCCCCTTTGAGACTGGCAAGTGCAAAGTCACGTTGTTCTTGGCCTTTACCAC
CATGCAGCGTACAGGCATTGAAACCAAGTTTTTCAAGTCCCTTTGCAAGAACATCTGCAC
CTTTTTTCTGGTTAACAAAAATAATAATGGGTGGTTCGACACCACGCTGCAAAATCTCTG
TAAGTTTTCTACGTTTTTCATTCTCGCCTATCATGTAGACTATTTGTTCAGTTCTGTCTA
CTGGTTTTCCTACAGATCCAATATATACAATAGCCGGTCTTCTGAGATAACTTCTAGCCA
GCCGCTCTACAGCCGGAGGCATTGTTGCCGTAAACATCACAGTTTGTCGGTATTTCTTTT
TTGTGTTATAATTGGCAAGCAATACTGAAGCATCTTCAGCTGCATCACTATCAGGTTTTA
TGTTCGATACAGGCATGTATTCCAGGATTTTTTGAACATCCGGTTCAAAACCCATATCAA
TCATCCGATCAGCTTCATCAAGAACAACATAGGTACAACGGTTTAGTACTAAATATCTGT
TGTCTAAGACATCAATAAGACGACCGGGAGTGGCAATGACAATCTCACAGCCTAACCTCA
GCTTAAAACCTTGTTCTTCACGAGATAAACCTCCAACAACCACTACTGATGTGATACCAA
GAGGAATACCAAATTTATTAGTTTCTTCTTCGATTTGTTGAGCCAATTCACGTGTTGGAG
CTAAAATTATAGCATAAGGTCCTTGGTCAGCATCTTCCATACGTTCACTCTTTGGCAGAG
ATTGAATCCATGTAAGTAATGGTATAAGGAATGCCAATGTTTTACCGGAACCAGTTTCAG
CAACACCAATAATGTCACGGTTCTGTAATCCAATTGGAATAGCCTGCCTTTGAATAGGAG
TTGGGCTCTTATATCCAACTTTGTTGATTATGTCCATAATGTCAGTATGCAAGGGAGCTT
CCTTCCAAGAACGTATAGGGTTAGGAATTTTACCTCCTTTTAAGGTAATATTGTAGTCTT
CCCTGAATATCCTCCAATCACGCTCTGTCATCTCATCCACATCTTTCTCAGACCAGTGTC
TATCATCCCACTTTTGCTTGTCTTCCTTCTTCTTCACTTTCTTCAAGCGTAGTTTTTCTT
GTTCTTTCTCTAACTCAGTTCTGCGCTTTTCTAAAAGATTCCCATAGAATTTGCTATGGT
CTTTCTTTTGAGACTTGATATCTATACCAGCAATGTGTCCACGACCAAAGAATTGTACTT
GATGTCTTTCTTTGTACAAAACATTATAATCATTTGATGTATCTTCTGACGCATCCCAGT
CAAAAACAAATTTCCTGTCATTCAGCCGTCTTACTCTACGCTTTTTCTTTACTATACCTA
AGTAACGAGCTTTAATAGCCTCTTCTTCTCTTTCTTTATCTTTTGTTTTAGATGTCTCTT
CATTATCTTTTTTTGGTTCTCGACGATCTGAATAGGCTTTCCTCTCTTCATATTTCCTTT
CCCGTTCCTCTCGACGTTCCTTTTCTCTATCTTTTTCACGTTCTTCTCTGTGCCTTTTAT
CTTCTTCCCGTCTTGACGGACCTGTTAAATCAATAGTGACTTGAGGCTTATCAGTATTAG
CTCTTATAGCTTCTACTTCTTGACGCCGTTTCTCCAAAGCTATCTGTGCTCGTTGCTCTT
TGGTAAGAAATACTGGCTTACTGCGGGCTTCTTCCTCAGCCTTTTTCTTAGCAAGTAGTT
CTTCTAAGGACAAAGGCTCTTTTTTAATTGGTTTTTTATCTATGGATTCATCCTCTTTCT
TCATGTCTGCAGTGTCTTCCTCCATTTCATCTTCTTTTTTTGATCTACTCTTTTCCTTGT
CTTCGTAACGTCGATCTTTGTCTTTGCCGTCACGTTTCTTAGGGCTGCGCGAACGACCGC
GTTCTTTACGTAGTGGACTCCTAGAACGATCGCGATCTTTTCTAGAAGGGCTTCGAGCTT
TATCCGCATCTTTTTTAGGGCTTTTAGACCTGTCCCTGCGCTTTACTTTTTCACGATACG
ATTCGCGTTCATCGTAACGATCCCGATCTCTTCTATCTCGTGATCTTGACCTCCGCCGTT
CAGGACTTCTGTCTCGGGCCATTTTTGGTTTATGGAACCACCGGTTTTTATTTTGTTAAT
TTCTTTATAGGTATTATACAGCAAATACAATAAAATTAAATTCGGTGTATTTTTCATGTA
CAAAATGTAGCAGTATGTGAACAACTTCAATGTCACATTTTTG
(2743 bp)

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