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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp12434_c0_seq1
Scaffold_idBomo_Chr7
NCBI non-redundant
(nr)		PREDICTED:_SWI/SNF_complex_subunit_SMARCC2_isoform_X2_[Bombyx_mori]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000790 C chromatin
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006337 P nucleosome disassembly
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007399 P nervous system development
GO:0016514 C SWI/SNF complex
GO:0016568 P chromatin organization
GO:0017053 C transcription repressor complex
GO:0021882 P obsolete regulation of transcription from RNA polymerase II promoter involved in forebrain neuron fate commitment
GO:0031492 F nucleosomal DNA binding
GO:0043044 P chromatin remodeling
GO:0043234 C protein-containing complex
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0071564 C npBAF complex
GO:0071565 C nBAF complex
GO:0090544 C SWI/SNF superfamily-type complex
Transcript
Level		FPKM:7.21 TPM:7.25
ORF EntryO_BomoSK10916_complete:A_BomoSK_comp12434_c0_seq1
Sequence
(Nucleotide)
AACGGCGTCGCCGAGTACATTAATACTTGATAGTGTTTTCAAAAAAAATCGTATAATTTG
TTGATAATTTATAGTGTGGAATTGTTAATTGTAAAAAATCATGACTACAATAGGCCCTAA
AAAGGATGGTGGTCCTAATGCTGAATATTTTCAGTCACCCGAAACACTTGCTCAGTTTGA
TCTAATTCGTGTTTGGTTACAAAAAAATTGTAAAAAGCATGTTCAAACCGATCCACCAAC
TAAGGAAGGATTAGCCCAACTTGTTGTTCAACTTATTCAATATCAAGAGAGCAAGTTAGG
CAAGAATGCATCAGATCCACCCTTCCTGAGGCTTCCAATGAAAGTGTTTATGGACATGAA
GCCGGGCGGTTCTCTGTGCACGGTGCTCGCCACCATGTTCCGTTTCAAGTCGGAGCAGCG
GTGGCGTAAATTCGACTTCCAGAACCCTTCGCGCAAAGATCTGAACGTGCAAATGATGAT
GGAGATCGAGTCGGCGTTGCTCGGTGCTGACGTCATCCGCTCGCCCTGCGTCTACATACG
TTCGGAAGTCGATAAGGCCACCGCTAATAAGGTCAAAGACATCGTTGTCAATCATCAAGG
AGAGATATGCGAAGACGAAGAGGACGCTACGCATATAATCTACCCGACGATGGATCCTCA
CGAGGAAGAGTACGCTCGTCCGGTGTTCAAACGCGGGAACCACGTACTCGTGCACTGGTA
CTATCTACCAGACAGTCACGACACTTGGGCACAGGCTGAACTACCCGTGGATACTCCTGA
AGCCGTGAGTTGGGAGTGCACCCGAAGCGAGCCGTGGCGCGTCACCGCCTCGTGGGCGCT
CGACCTGCCGCAATACAACGAGTGGATGAACGAGGAAGATTACGAGGTCGACGCTAACGG
GAAAAAGAAGACTCACAAACTGCGCCTGTCCGTGGACGACCTCATTCCGGGCTCGGAGCC
GTCCAGCAGGAGCAAGAAGGGAAGCAAGAGGAAGAGGTCGCCCTCGCCTCCACCACAGAA
GCACAGCAAAAGGAAGAGTCGGTTGGCGAAGCGTCGCGAAAACGACGTGGACGAGGAGGA
GGATAACGCTTCCCGCGACAACACTGACGTCACGCCCGCGCCCGACGCCGAAAAACCGCC
GGAGCCGAGCACCACCTCAGCTAGCGCCTCGAATGCGAGTGCGAGTGCGAGTGGCAGTGC
GAGTGCCAGTGCGGGCGCCACCGAGAGCGCGAGTGCCGTGGAGGCGCCCCCCACCCCAGC
GCCGCATCCCGACTCACACGATGACTCGCAGGGAAAACATTCTGACTCTAACACACAGGA
AATGCTTACCAAAGAAGAACTGGAGGACAACGTGACGGATCAGACTCACCACATCGTCGT
GCCCTCTTACTCCGCCTGGTTCGACTACAACTCCATACACATGATCGAGAAACGCGCCCT
ACCAGAGTTTTTCAACGGAAAGAACAAGTCCAAAACTCCTGAAATATATCTAGCCTACAG
GAACTTCATGATCGACACGTACCGCCTGAACCCGACCGAGTACCTGACGAGCACGGCGTG
CCGCCGGAACCTGGCGGGCGACGTGTGCGCCATCATGCGCGTGCACGGCTTCCTGGAGCA
GTGGGGGCTCGTCAACTACCAGCTGGAAACCGAGTCGCGTCCAACGGCAATGGGTCCGCC
TCCGACGTCCCACTTCCACGTGCTGTCGGACACGCCGTCCGGACTGCAGCCGCTCATATC
GCGGCCCGCGCAGCCCAGACCAGCCGAGAACGTTCCTAAAGTGGAGCCAGGTCTGCCCAA
CGGGGCGGAGAGCGGCGCCGCCCCGCCCGCAGCCCCGCTCAAGGTGGAGCCGGGACCAGA
ACTGCCTTCCGCGCCCGGGATCAAACTCGACCAGTACCGCGGAGGACAGCGCGGACGGGA
GTGGACAGACCAAGAAACCCTTCTGCTGCTCGAAGGCCTGGAGCTACACCGCGACGACTG
GAACCGCGTGGCCGCGCACGTCGGCACCAGGACCCAGGACGAATGCATCCTGCACTTCCT
GCGGCTGCCCATCGAGGAGCCGTATCTGGACGAGCCGGGCTCGGCCGGAGTTCTAGGGCC
GCTGGCCTACCAGCCCATACCCTTCAGCAAGACCGGCAACCCGGTCATGAGTACCGTCGC
TTTCTTGGCCTCGGTCGTCGACCCCCGCATCGCGGCCAAAGCCACCAAAGCCGCGATGGA
TGAATTTGCTGCTATCAAGGACGAGGTGCCGGCCGCCATGATGGAGGCGCACGTGAAGGC
GGCGGGCGCGCACGGAGCCG
(2300 bp)

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