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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp12383_c0_seq1
Scaffold_idBomo_Chr5
NCBI non-redundant
(nr)		hypothetical_protein_KGM_17243_[Danaus_plexippus]
Ontology
GO:0000166 F nucleotide binding
GO:0000178 C exosome (RNase complex)
GO:0000398 P mRNA splicing, via spliceosome
GO:0000460 P maturation of 5.8S rRNA
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0006397 P mRNA processing
GO:0006401 P RNA catabolic process
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:12.87 TPM:12.95
ORF EntryO_BomoSK10829_complete:A_BomoSK_comp12383_c0_seq1
Sequence
(Nucleotide)
TTTTTTTCGAAAACAATATTGGTATAATTTCGGTTCTTCTTAAAACTACATATAAAGACT
GGCTGCGAACACAATGTCCCTCTTGAGCATTTTGATCGCGTCACTGAATTTATTCTCCAA
GTCGGTGTTGCCAATGTTCTTGGCAGCCTGGCACAGCTGTCGCAACACCTCCTCCAAACG
TCTCATACATCTTATTATTGAACCTTCAAAAACATCAGTCATCTTGCATATCTGCAAGAA
CGAAGCTCCTTTGGCCCATGACAGGACCACGTCCATGAGTGTACATTTAAATTTACTAAC
GTAAGTATCTTCATCCAAATCCATTTTAGAATCGATCGATACCTTTGCTATTCGTCGGGC
ATATTCCTGTAGTTGCCTGAGCACGCCGCGCAGCTCCTCGCCGGAGACGCTGGCCTGCGT
GGAGTTCTCGTCGCAAACGAAGCAGCTGATCAACGCCGCGCTCTGCTCCGGAGACAGCGC
GTTGAACACCCCGTTGAATATCAACTCCGTTAGCAGCAGTTCGTCCGCACTGCTGAGCTC
GCAGGCGATGCGTCCCTTCATCTCGATGACGTCGGCGGCGGTGCAGTAGCCGAGCCGCCT
CAGCACCCGTTTTCTCTTCTTCAGCTCGTCCATCTGCAGTATGCTCTTCGCCTTCTTCAG
TTCCGCTTTAGCGTTCTGTAGCTCTTCATATAACTCTTGTTTCTTGTCGTAAGCAGCTGT
CAGGGCGCTTCTGTTTTTGTCTGTATGGATCGGATGTGAGTATAGTCTTTCTTCCAATAA
CTTGATTCTATCGACGCATTGTTTAAACACTGAGTCATTAATTTTCATATCATTAATGGG
ATTCAACAGCGGGGGACCATCGGGGAACCTCTTTTTCACCTCGCCTATAGTCTTCAATAC
AGATTTCCGATTGTCCGAAGGCCTCAAGTCCTTAGGATAGTACACCCGAAGAGAACTGAT
CTGGTATATTAGTGTGTGTACGACTGGAACCACTTGTACGTCGCCAGACTCGCCGGGCGG
ACACGGCACGTTGGTCTCGCCGTCGCCGCCGGTCGCCGTCTTCACGTGCAGTAGGATGTC
GACAATAATGGCGGGCTCGGCCGTCAAAGGATTCTCTTCTTGTCCTTTCTTGCCTTTGTT
CGATTTATGTCTGAAGTTCACTATGATGCCCCAGTCGTATTCGTATTTCTCTGTTTTCAC
CTTGACAAGTCTTCCCGGTTGCAAAAAAGGCTTCAAGTACTCCGGCTTAGTTATGAACGA
CCGAAACTGGTCCCCGAGCAAATCTAGCTGAGTTCTGATGGTGGAGTATGAAGCTACGGA
GTTCTCCTCGTTAACGGACAGGGCGTCGTATTGTTTCTGTTTTGCTTTGACCTTGTCTAT
CAGATCCGGTATGGCTGCTTGATTCTGAAACTGGAAGAAACTTCTTTCCAGCATATATTC
CGGATTGATTTCCTCTACACGCAGTAGATTAAGAACCATATTATAAGTGAGATGGAATGC
AGAATTAATAGGGTCAGCTTTCCCTTGCACCATGCCTTTGACAACAGTGGGCGTAACCTT
CTCGTCGATCATCAATATAACGATACCCTTGTCGTCGAGACCTCTCCGACCAGCGCGACC
AGACATCTGAATATATTCACCTGACGATATAAATCTAACTTCCTTCCCGTCAAACTTTTG
ACAGTTGGTAAACACTACCGTTCTCGCAGGCATGTTCAATCCCATAGCAAATGTTTCAGT
AGCAAATAAAGCCTTGATGAGTCCTAAGCCGAATAATATTTCAATAGTTTCCTTCAGTAT
AGGCAGTAGACCTCCATGATGTATGCCAATGCCGCGCCTCAACAAAGGTATAACGTTCTC
TACTTGTGGTAATTTCCGATCCTCTTCACTTAAAACATCCATTGCGTTGCTAAACACTTC
GTCCACTAGTTTTTTTTCTTCAATTGTGTTGAAGTCCAGTTTCGCCATCTGTAGGGCATA
TAGTTCGCAATCCTTTTTACTGAAGCTGAATATGATCACGGGAGCGAAATTTCTTTCCAT
AATCATTTTGACAATGTTAAAAATATTGGTCTGATTTTTATCCCGGGGTCCGCCGCGTCT
ACCACGTTGGTCGCCTTTTGCTGCTTCACCTGCATTGTTCAGCACTGTCATTGCTGTGTT
GAAGTTATCTTCCTTGAATATACCCTTTTCATCAACAACCAAATGTATTCCATCACCACC
GGCTGGGAAAATGTAGTGTTGCAGTGGAGTGGGTCTGTATTCTGTATAAATGACGTGACA
AGGCTGGGAATGCAAGCGACAGACCCACTCGGCAAACTGACGTGCATTAGGTATAGTTGC
AGACAAAAATACATAATGCACATTGTCCGGCAGAAGGATGAGTGTTTCTTCCCAAACGAC
ACCTCTCTCCTTATCTCTCATGTAATGAATCTCATCAAACACAACCCAACCAACTTCTCT
CATAATTTCTGAACCTCTATACAACATGTTCCTGAGAATCTCAGTTGTCATGATAAGACA
TGAAGCAGAGGGATTGATAGTTACATCACCAGTTATTAAACCAACATCATGAAACTCCTC
TGAGAACTCTCTATATTTTTGATTCGAAAGAGCTTTAATAGGGGTTGTGTATATTACTCT
CTGCTTGTTTTTTAGTGATAGAGCTATGGCATACTCAGCAACCACTGTTTTGCCAGCAGA
CGTGTGAGCTGATACAAGTACAGATTGTAAATTATCTATACACAATATTGCTTCTTTTTG
AAACGGATCCAATATGAAACTGTACTGCTTTACAGGTTCAGTTGTCAGTGGTAAAAGAGG
AGCATATTCCTGATTAGGTGGTATTGCCACTTCATGTGTACAGCCCTCGTGAGTTTCTAG
CGTGTGTATCACTATACGAGATTGGAGCAGATCAACATTTATGTCGGTAATCAATTCAGA
GTCTTCCTCTTCTTCGCGAGGCTTTTTTGATACAGAGGTATCAGCGTACTGGATGTCATC
ATGTGCACGCTTATTTCCAGCAGCAGTCAACTCTTCCAAGTTTGGTTTTTCAACATTTTT
AACATTTGGCAGCTGAATCGCAGCTTCAGTTATTGGTGTTTCATCAAAACAGTCAAACAA
ACTATTTATGTCAGACATTTTAAACAGGTAACTTTGCAGATTTTCAATATTGATTTAGTA
CATTCCATTTATCAATTTATCAGTTTAGATTTTAGAGTACATTTCTGATTCTCTTTCAGA
TTTTGTTGTTTTATTTTCACTGAATAGACTCCACAG
(3276 bp)

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