SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp12369_c0_seq1
Scaffold_idBomo_Chr15
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_TRIP12_isoform_X4_[Bombyx_mori]
Ontology
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008270 F zinc ion binding
GO:0009790 P embryo development
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:1901315 P negative regulation of histone H2A K63-linked ubiquitination
GO:2000780 P negative regulation of double-strand break repair
Transcript
Level		FPKM:2.09 TPM:2.11
ORF EntryO_BomoSK10802_complete:A_BomoSK_comp12369_c0_seq1
Sequence
(Nucleotide)
GCGCGGCCTCCCGCCGCACCTGCTCGGCGCGCTCGGGCCTCGCATGCAGCACCTCCTGCA
CCGGACAGTCACCGCTAACTCGGCGGCTTCTAAAGCAGCTCAACTGCTCGCTGGCCTCCA
GGCAACCGGCGACGAAGGCCAACAGCTTCAAGCCGTCATAGAAATGTGCCAACTTCTCGT
TATGGGCAACGAGGACACGCTCGCCGGCTTCCCGGTCCGACAAGTCGTTCCCGCTCTCGT
TAACCTGCTCGCTGCCGAACATAACTTTGACATGATGAACCACGCGTGCCGCGCGCTGAC
GTACATGCTGGAGGCGCTGCCCCGCAGCAGCGGCGCCGTGGCGCTGGCCGTGCCCGCCTT
CCTCGACAAGCTGCAGGCCATCACGTGCATGGACGTCGCCGAGCAGAGCCTCACCGCGCT
CGACATGCTGTCCCGCAGACACGCCAAAGCCATCCTGCAAGCGCGAGGTGTATCGGCCTG
CCTGACCTACCTGGACTTCTTCTCCATAAACGCGCAACGTGCCGCGCTCTCCATCACCGC
TAATTGTTGCCAAAACCTCACTGCAGATGAATTTCACCTTGTCCGAGAATCTCTACAATT
GCTTGCTAATAGACTAACTCAACAAGACAAAAAGTCAGTGGAGTGCGTTTGTCTCGCATT
CTCGCGGCTCGTGGACAGCTTCCAGCACGACCCGGCACGCTTGCAGGAAATCGCCACTCC
GGAATTACTTACTAATCTACAACAACTTTTGGTGGTGCAGCCGCCACTGATATCGGGCGG
GACGTTCATCATGGTGCTGCGGCTGCTGTGGCTCATGTGCGGCGCCTGCCCGCAGCTCGC
GCTCGCGCTGCACCAGCGGTCCATCGCCGACACGCTGCTCTGTCTGCTCACCGGCTCCAC
GCTACATCAGGAGCAAGTGGAGCTGATACCGCGCCTGCCGCAAGAGCTGTATGAGATCAC
ATGCCTCATCGGAGAGTTGATGCCGCGGCTACCCACCGACGGGATCTTCGCGGTGGACGC
ACATCTCGACCGGCCCTGGTCCACCAGCACCGAGCGAACTGCGCATTGGCAGTGGCGAGA
CGATAGAGGTGCGGCGGCGGGCGAGGAGGAGGTGTGCCTGAGCACGCTGGGCCGCTCCTA
CACGGTGGACCTCACCGCCATGCAGCAGCTCAACGAACACACCGGCACCGCGCGGCCCGT
GCAGCGCCTCGCCCCCCCGCACGCACCA
(1228 bp)

- SilkBase 1999-2023 -