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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp12245_c1_seq5
Scaffold_idBomo_Chr11
NCBI non-redundant
(nr)		PREDICTED:_mismatch_repair_endonuclease_PMS2_isoform_X1_[Bombyx_mori]
Ontology
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006298 P mismatch repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007126 P meiotic cell cycle
GO:0015630 C microtubule cytoskeleton
GO:0016446 P somatic hypermutation of immunoglobulin genes
GO:0016447 P somatic recombination of immunoglobulin gene segments
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0030983 F mismatched DNA binding
GO:0032138 F single base insertion or deletion binding
GO:0032300 C mismatch repair complex
GO:0032389 C MutLalpha complex
GO:0032407 F MutSalpha complex binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
Transcript
Level		FPKM:2.54 TPM:2.56
ORF EntryO_BomoSK10566_complete:A_BomoSK_comp12245_c1_seq5
Sequence
(Nucleotide)
GGAAAACTAGACATTAATCTAACCTCAATTTACACGTAATTTCCAATACCTGCTAGTAAA
GTAATTTGTAGAATTCCATTACATATTTCTCATACGTTTACTTTTTATTTAAACATAACT
TCAAATCAGCCTCATTGATTATGTCCAACGAAGCAGATGAACGTATGGACTCAAGTTCAG
AGAATGAAGACGACGAAATGAATGAAGAAGCGGAGAGTGACCAGAACGATGATCGCCCGA
AAACTTATTTACCAGACCAGCCTTTAAAGGAAGATGAACAATTGGTCTGTGATCATTCTG
CTTATGTGATGCTGCATCAGGCTCAAACTGGAGCCCCATGTCTTAGCTTTGACATAGTTA
CAGACAATCTTGGAAATGATCGAAATGAATTTCCTATGACTGCTTATTTGGTCGCCGGAA
CACAAGCGTCAAGTGCACATTTAAATAATCTTTTGGTAATAAAAATGTCAAACCTACACC
CTATATCTAAACCAGAGGAAGATGAAGAATCTGAAGATGATGATTCTGATGATGAAGATG
AAGAGCAGAAACCACAGATGACATTCTCATTCATAAAACATCAAGGATGTGTAAACAGAA
TAAGGGCTACAAATTTTAAAAACTCTGTATTGGCAGCAAGTTGGTCAGAACTAGGCCGAG
TTGACATTTGGAATATCACACAACAGCTGCAAGCCGTGGATGACCCAGTCGTGTTAGAAA
GATACAACTTGGAGACAGTTTCAAATCCCGTCAAACCTATATACTCATTTAACGGGCATC
AGCAAGAGGGTTTCGCTCTCGATTGGTGTCCTACTGAATCAGGTATGCTGGCAACTGGAG
ACTGCAGAAGAGACATTCATATATGGAGACCAAATGAAGGTGGCACTTGGACTGTAGACC
AACGACCCCTTGTAGGGCATACCAGTTCTGTTGAAGACATACAATGGTCTCCAAATGAAA
GGAACGTATTAGCTACATGCTCTGTAGATAAGACCATAAGAATATGGGATACTAGAGCAG
CACCACAAAAGGCTTGCATGCTCACAGCTGAAAATGCACATCAAAGTGACATTAATGTTA
TATCATGGAATGGAAAAGAGCCATTTATTGCAAGCGGCGGTGATGATGGTTTTCTACATA
TCTGGGACTTGAGACAGTTTACAAATAGTACTCCAGTGGGTACATTCAAACATCACACTG
CACCAGTTACATCAGTGGAATGGCATTGGACCGAGCCCAGCGTGTTAGCATCAGCAGGAG
AAGATAATCAAGTAGCTCTTTGGGACTTAGCGGTTGAAAAAGACGATGATGAAGTTGAAG
ATGATGATGAATTAAAGAACCTTCCGCCTCAGTTACTATTTATTCATCAAGGACAGACTG
ATATTAAAGAGTTACACTGGCACAAGCAACTACCTGGCGTTATTGTAACAACAGCACATA
CAGGATTTAATATATTTAAAACTATTAGTGTTTAAATAAATCATACAAAATTTAAGTCTT
TATTTCTTAAAAAAAAATCTTTATCAAAACGATCTTCCATGATTTTTGATAGAAATAATA
CTAAAATAAAACTGAAGTTCTCAAAATTTATATCCACTGCTGTACTCAGTTTGGACCATA
GCTAAGTTGACCAAATGCCTTATGGTGGGGCGTCCATGTGGACAGTTCCACGGCTTATCA
ATTTCTGCCATATGGTCGACCAGCGTTCTCATGTCGGATTTTTTCAAAGCTGTGCCAATC
ATGACAGACTTTCTGCAAGCTCTCGATGCGAACATTGCTCTTACTCTACTCGGCCTGCAA
TGTTCGGTCGGAGCTTCCCTTAACATAAAGAGCATTTCTTCGATATCTTCCTTTCCAAAT
AACCAATTTTTCGACATTGGTATAGTCAAAAGTTTTACACGTTTCGTTGGCAATGCCTCC
TTATTTACTTCAAATGTAAAACCGTTCTTTTTGAAAATATCTATGTTGTCCATTAGTATT
TCTTCGTTTACACCTGTTAACTCTAGTTGTTGTGGGATCACCAATTTTTGACTGGTTAGT
TCTGTTGTACGCTGTAAGGTTTCAAAATTATAAATCTCATCAGTAGCATGTTGGTCTATT
ACAAAAAGATCATCTTCTAGTTGTGTTATTATGAAACCCAAATTAAATTGCCCCACAATA
TGCATCTTCTTAAATGAATCCTTAGATATTTCTCGTATCAATTCTTCTTCACATTTTTTA
TTGAATACTGGATTAATGGCGCTTTTAAATTTCACTTTAGTAGGTAATATCCTTTCATTA
TTTCTATTATAAATTTCTGTTAAAGCCTGGACATGCTGCAAAGAAGTTTTTAAAATTACT
GATCTCCTGTGGTTCTTACCTAAGTCTTCTTTGTCTGTCACCGTTAAAACTTTATTGTAG
CTTTCGGAGGTTTTTTTAGATCCCGGTGGTAAATGTATCTTAGGTTTTGTTTTTGTTTTG
CAGTTAATGGTATAAGTTTGCTCTACAACTTGTTCTGATAACTGTTTTATCTGTGTATTT
GGCATTTCGTTGCAATAGTCTAAATATATAATCTCTTTTTCCTCTGTGATTTCAGTTTCT
TCAGATTTAATTTGGTCAGATATAATTATCGGCGTTTCTATATTTGTTGGTCGAGGTATT
AATTCTGTAACATTTTTGTCATCACTGCGCCCCTCAGATTTCATAGGGACTTGAGGGATC
TCTTCTGAATCAAGCAATTCATTGGTATTAATATCACTGGACATCAATTTTGATTCATTA
ATACTTGAACAGGGTTGTTCTAGTCTTTTACTTTTCATAGTAATGTAGTCAGTAATTGCT
GTAGATTTTCTTTTTAAATCAACTTTATTTAAATCTTCCCTTTTTGAAATAGGATCACAA
AGCTTTGATTTTTTATCGAATTGTTGCAGGAAAGACGTAAAAATTCTCGGTTGATCTAAT
TCTGGTTTATGATCTTTCGAAATAGAAACATTTTGGGAAGAGTCTACTTTCAATGTCCGC
GGTATACTTTCAAATAACTTAAGTAAAGAAACTTTTAAAACGTCCAATATATTTTTCTCT
TTGGTTAAAAATAATTTTCTTTTATCCGGCGTTAGATTTATGTCTACAGACGATCTTTCA
ACATTAACATTCAGAAAAACAAAAGGATATTGGTTTGGATTGTATTGTCTGTAAACTTCA
TTTATGAGTTTAGTTATTTTAATTGGTTCACAAGGCCTGTTATTTACGAAGAAGAACTGT
CTGTCTGTACTAGATCTACCACGCCCATGTTCACACGAAGATACAAAACCTATAAATTCA
AACGGTTTAACAATGTTTTTATATCCTTGTGATTTAATTTCATCTTTTGCAATAGCTTCA
GACTCGTTGTCGTTGGAATCTTCTGATAGGTTAATGTCCACATCTTCGATGACAAAACTT
TGTTGATCATGAGCTACTTCACTAGATAGACCTTTAAAAATATTATCTTTTATGTTTTGA
GTGTATTCGGGTTTTATTTCGATTATTGTCTGTAGTTGTTTAAGACCAAATATACTGGCA
ATGTTGTCTTTATACGAGGAGCCATGCGTTTCAACTACTACAGATTTTGTATTGGAAGAT
GCCTGATTCGTACACGTAATTTTAACACCTATTGAAATTAAACAGTATGCATATAGTAAA
TGCGTCATTTTGTTGAATTCTCTTTTTACATTGTTATGAAATTCCTTTTGTCTCACTGGC
AAGGAATGAAACAGATTTGTACAAGTAACGGTTGTTCCAATTTGCCTAGAACATGGTGTT
GTCTTTACAATGTTACCTTTAAGATCGTATTCTATTTTAATTGCATAATTGGAATTTTTA
TGCCTGGTAGTTACAGTCAGATTTGCCAAAGCACAAAGTGAACTAAGAGCTTCACCTCTA
AAACCAAAACTTGATACTCCAAGCAAATCTGAGTAGTCACTCAATTTTGATGTATGATAT
TTTAAGGTCAATGCTGCAAAATTATCTTCATTAACTCCTGAACCATTGTCTGAAACTTCA
ATGCTATCCATACCATAATTCTTGCATCTAATATCAATTTTGGTAGCTCCTGCATCCAGT
GAATTTTCCACTAATTCCTTAACTGCTACAGCCAAGTTCAAAACTACCTGTCCCGAACAA
ATTTTATGAACAGTATTTTCATTTATGGGTTTTATATCACTTGAAGGTGTACCTAAATTG
TCCATCTTACAAATGTTTTAAGAAATTGCTTATATACGACTATGACTATTTACATGAGAG
GAATTTGGTCTTCGTAACTATGGACTACTATGGAGTGTCTATTATTTCTATTAATTTAAC
TATGTACTTAAAAGTATACAACGATATAAGCCAGCAAAAAGCAGAATCAAAGACTACATT
GAGATATGTATGAGTTATGTTTAAGTATAAAGTATGTAAAGGTCTTTAATTAATTTTCAG
TTTTCTAAGTTTTG
(4454 bp)

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