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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp12093_c0_seq1
Scaffold_idBomo_Chr10
NCBI non-redundant
(nr)		PREDICTED:_splicing_factor_3B_subunit_1_[Papilio_machaon]
Ontology
GO:0000245 P spliceosomal complex assembly
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000398 P mRNA splicing, via spliceosome
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005686 C U2 snRNP
GO:0005689 C U12-type spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0034693 C U11/U12 snRNP
GO:0044822 F RNA binding
GO:0045815 P epigenetic maintenance of chromatin in transcription-competent conformation
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:15.24 TPM:15.33
ORF EntryO_BomoSK10216_complete:A_BomoSK_comp12093_c0_seq1
Sequence
(Nucleotide)
ATGTAACTACCTATGCATAAAATCGGACATAGTCTGTGTTTACGAAAAAAACTCACGCTA
CCTATCTAATAAATCATCGATAGAAGAGAAAATAATTTGATTTCATTGTCCGTAAAGTTG
CATAAATGTCTACAATCTTCTAAAAATGGATAAAATACCAAGAACTCATGAAGCCATTGA
AGCACAAATAAAAGAAATACAATCAAAAAAAACTGAAGCACCAGAAAATGGTTCCAACAA
AGGCGTGTCTCTCGGCGAGACTTACTATGACAGCGATATATATGATAGCACAGGCCAAGG
AGGCAAGTCCAGATATGACGGATATGTGACATCAATTGCTGCTAATGACGAAGTAGAAGA
TGATGACCTCGAAAATGTTCCTATAACTCAGAAAAGGCCAGGATATACAGCACCTGCTTC
ACTGTTGAATGACATTGCACAAAGTGATAAAGAATTCGATCCTTTTGCTGACAAACGAAG
ACCAACTATCGCTGATAGAGAGGATGAATATCGACAAAAGAGGCGCAGGATGATTATATC
ACCTGAAAGAAATGATCCTTTTGCAGAAGGTGGGAAAACTCCTGATGTCGGATCGAGGAC
ATACACTGATATAATGAAAGAGCAGTATCTTCTTGCTGAAGAAACAGAACTCAGAAAGAA
ACTGTTAGAGAAAGCTAGGGAAGGAACTCTCAAACCAGTACCACAATCTAATGGAGAATC
CATAAAACCAGCAGCAAAACGCAAAGGTAGATGGGATCAAAGTTCTGAAGAAACACCAGT
TGTTAAGAAAACAGTATCAACTACACCAAGCTCACAGACAACTCCGTCTTGGGATGCTGA
GAGAGGCACATGGGAAGAAACTCCGGGAGCAGGTCGGGGCGGCGAGACGCCCGGTGCCAC
GCCATCGGCACGTGTTTGGGATGCCACACCAGGACATATCACTCCTGGACACGCCACTCC
GGGGCGCGAAACTCCGGCTCATCACGCTTCTCGCAGAAATCGCTGGGATGAAACACCAAA
AACAGATAGAGAAACACCAGGACACAACAGCGGTTGGGCTGAGACACCACGAACAGATCG
CGGGTCAGGCGTGGATACAATACAGGAGACCCCCACCCCTGGCACAAAGCGGCGCTCGCG
TTGGGACGAAACCCCCGGTGCCACGCCCGCACCCGCCACCCCCACGCCTTCTCACGCCAC
GCCTTCCCATGCCACACCCTCGCACGCCACGCCATCGCTCTCTACACCGACGCCGCACAC
GCCTGTCTTCACGCCAGGAGGGTCTACACCTGTGGGAGTGAAAGCCATGGCACTGGCTAC
ACCAACACCTGGTCATGTTGCAGCCATGACTCCAGAACAGTTACAAGCTTATCGTTGGGA
GAAAGAAATAGACGAGCGTAATAGACCTTACACTGATGAAGAACTGGATGCCATGTTCCC
TCCTGGGTACAAGGTTTTACCACCGCCTGCCGGGTACGTCCCGATTCGGACGCCGGCCCG
CAAGCTGACGGCGACGCCCACGCCGTTGGGTGGTACTCCAATCGGGTTTTTCATGCAGAC
GGAGGAGCCGGGCGGCTCGGCCGCGGCGGCCGCGCGTCTTCTCGACCCTCAGCCCAAGGG
TAACCAGCAGCTGCCCTTTATGAAGCCCGAGGACGCCCAGTACTTCGACAAACTTCTCAT
CGACGTCGACGAGGATACACTCTCTCCCGACGAACTTAAGGAACGGAAAATAATGAAGCT
TCTTTTGAAAATAAAGAACGGTACGCCACCCATGTGCAAAGCTGCCTTACGACAAATAAC
AGATAAAGCTCGCGAATTCGGTGCTGGACCACTTTTCAATCAAATTCTGCCATTACTGAT
GAGTCCTACGCTGGAAGATCAAGAGAGACATCTACTGGTCAAAGTCATAGACAGGATTTT
GTATAAATTAGACGACTTGGTTCGACCCTACGTACATAAGATTCTTGTCGTCATTGAACC
TCTGCTTATTGATGAAGATTATTATGCGCGTGTCGAAGGTCGCGAGATCATTTCAAATTT
AGCTAAAGCAGCCGGCTTGGCTACTATGATTTCTACAATGAGGCCTGATATAGACAACAT
AGATGAGTATGTACGAAACACAACCGCTCGAGCGTTTGCGGTAGTGGCATCGGCCTTGGG
TATTCCATCTTTATTGCCATTTTTAAAAGCTGTGTGCAGATCTAAGAAATCCTGGCAAGC
ACGTCACACAGGAATAAAGATTGTGCAACAAATTGCTATTCTGATGGGCTGTGCTATTCT
GCCACATTTGAAATCTCTTGTTGAAATTATTGAACATGGTCTGGTGGACGAACAACAGAA
GGTCCGAACGATCACGGCGCTGGCGAGCGCGGCTCTGGCCGAGGCCGCCACGCCCTACGG
TATCGAGTCCTTCGATTCCGTGCTCAAACCTCTGTGGAAAGGTATTCGTACGCATCGTGG
TAAAGGTCTGGCTGCATTCCTGAAAGCCATCGGATACCTCATCCCTCTCATGGATGCAGA
ATACGCGAATTACTACACACGAGAAGTGATGCTAATTCTTATTCGTGAGTTCCAGTCGCC
CGATGAAGAAATGAAAAAAATCGTCTTAAAAGTAGTAAAACAATGTTGCGGTACCGACGG
TGTTGAGCCTCAATACATAATGGATGAAATATTGCCTCATTTCTTTAAACACTTCTGGAA
CCATCGTATGGCCCTCGACAGACGAAACTATCGCCAGCTTGTCGACACCACAGTGGAAAT
TGCAAACAAGGTCGGTGCATCAGAAATTATCAACAGAATTGTTGATGATCTAAAAGACGA
CAATGAGCAGTATAGAAAAATGGTGATGGAGTCCATTGAAAAGATTCTCGCTAATTTAGG
AGCAGCAGACATTGATTCTAAGCTCGAAGAAGCTCTTATCGATGGAATATTGTATGCATT
CCAAGAACAGACAACTGAGGATGTTGTGATGCTGAACGGTTTTGGAACAATCGTGAATCA
ATTGGGAAAACGCGTAAAGCCCTATTTACCACAGATATGTGGTATTATTCTTTGGCGTAT
GAACAACAAGTCTGCTAAAGTTCGGCAACAAGCTGCCGATCTCATTTCTCGGATCGCTGT
CGTGATGAAAACTTGTCAGGAGGAAAAGTTAATGGGGCATCTTGGTGTTGTACTGTATGA
GTACTTGGGAGAGGAATATCCTGAAGTGCTAGGCTCTATACTTGGTGCATTAAAAGCAAT
TGTCAATGTTATTGGAATGACAAAGATGACCCCACCAATAAAGGATCTCCTGCCTAGGCT
TACACCCATTTTGAAAAACAGGCATGAAAAAGTACAAGAGAATTGTATTGATTTAGTGGG
TCGTATTGCAGACAGAGGACCGGAATTTGTGTCGGCCAGAGAATGGATGAGAATATGTTT
TGAATTGCTTGAACTATTAAAGGCTCATAAGAAGGCAATTAGACGAGCGACTGTAAATAC
CTTTGGTTATATTGCTAAAGCCATCGGTCCTCATGACGTACTCGCAACCTTACTTAACAA
TCTGAAAGTGCAAGAGAGACAGAACAGAGTGTGCACAACGGTCGCTATTGCTATAGTTGC
AGAGACCTGTTCACCTTTCACAGTGCTACCTGCTTTAATGAATGAATACAGAGTACCGGA
ATTAAATGTTCAAAACGGTGTGCTCAAATCACTATCTTTCCTTTTCGAGTACATTGGAGA
AATGGGCAAGGATTACATTTATGCAGTTTGCCCATTATTGGAAGACGCGCTTATGGATCG
AGATTTAGTACACAGACAAACGGCTTGCGCTGCCATAAAACATATGTCGCTCGGCGTGTA
TGGTTTCGGCTGTGAAGATGCCTTAGTACATCTATTAAATCATGTTTGGCCAAATATTTT
TGAGACATCACCGCATCTGGTGCAAGCCTTCATGGACGCTGTTGAGGGCATGCGAGTTGC
CCTAGGTCCCATTAAAATACTTCAATATGCATTACAGGGCCTGTTCCATCCAGCGAGGAA
AGTACGCGACGTTTATTGGAAAATTTACAATACGCTTTACATCGGAGGACAGGACGCACT
TGTTGCAGGATATCCCAGAATACAAAATGACCCAAATAATCACTTCATTAGATACGAATT
AGATTATCTGCTTTAAAACATTATATTAAGATAGTTATAATTAAGAAACACTTCTGGGTT
TACTGAAAAATAAATGATAATGCAAAGATATTGTTCTTATTTAATGTTTTTATCGTAGGT
TCATGTGTAATTGAACCATCCTGCATTTGAA
(4291 bp)

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