SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp12011_c0_seq2
Scaffold_idBomo_Chr10
NCBI non-redundant
(nr)		PREDICTED:_chromodomain-helicase-DNA-binding_protein_Mi-2_homolog_isoform_X2_[Papilio_polytes]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003682 F chromatin binding
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007283 P spermatogenesis
GO:0007517 P muscle organ development
GO:0008026 F helicase activity
GO:0008270 F zinc ion binding
GO:0016581 C NuRD complex
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0016887 F ATP hydrolysis activity
GO:0031491 F nucleosome binding
GO:0032508 P DNA duplex unwinding
GO:0035327 C euchromatin
GO:0042766 P nucleosome mobilization
GO:0043044 P chromatin remodeling
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048813 P dendrite morphogenesis
GO:0051276 P chromosome organization
GO:0051312 P chromosome decondensation
GO:0070615 F ATP-dependent chromatin remodeler activity
GO:0071923 P negative regulation of cohesin loading
Transcript
Level		FPKM:10.40 TPM:10.46
ORF EntryO_BomoSK10022_complete:A_BomoSK_comp12011_c0_seq2
Sequence
(Nucleotide)
CCTGTAAGTTTTATTCAGTTTTCAATTTTTGGTAAATTAAAAATAAAGATTTCATAAGTC
CACAATTCACTTACACGATAGAAAAGATTCATACAGATCAGGATGAAATAAATAATATTA
TGAGTTATTTTCGCTATGACGTCATGTAATCTATCTGAACTAATCACAAATATAATTATG
ACTTCGGAGCCGATGTGGAAACAGGAATCTTCAAAAAAGCTTACATCTAATTCACCTACG
CGGCGACATATCCGCTCGCTGCGGGTTACGTCAAATCGAATATAGTTGTTTAAATTACGG
AGTTTATGATTTATTCGAGTTAGAGGATGATGTAGGCTGTCCGGGCACGGAGTACTGCGG
TCGGAAGTTGGAGAAATTAGCCGCCGTCGCGGCCGACGCCGCGAACCCGGGGAGCGTGCC
GCCGGGCTGGAAGCCGGTCGGGAACTGCGGCATTTGGGCAGCGGGCACGGGGTTGCCTGC
GGTGGCTGCGAGGCGCGACAGGATGGACCGCTCCGACATCTGCAGGCGCTGCGCGACGGG
CGGGATGCGCGCCAGCGTGGCCGGCAGCCGCGACACGTCCGACTTCATGTCCGACAGCAG
CTCTTCCAGCTGGTTCAGCACCTTGTGCAACACCGCGTTGGCTGGTTTGTTCCCAGCGAG
GGACTCCTTGCTGAGATGCTGGTGGGACTCAGCAAGACACTCGACTTCAGCGAACCGCGC
GTTCAAGGACATTGCGGGATGGTTCGGATCTTGTGTGAGGTTCAAGTATGCCGCTCTACG
GAGCTGCTCCTCGATCACTAACGCTTGTTCTAAAAGCTTAAAACGCCGAGCCAAAAACTT
ATTCTTAATCTCGAGGAAGTTTCCTTTGCCGACGTCCATCTTGAATGGCTCGTTAATGAT
CGCGAATCGCAGGTCGTTCTGTATGTCCTGCCAGCGACCGTATCCGTGCGTGACGATTCC
GGCCAGCAGCCAGTAGTCGTGTCTTCGGTGCCAGATTTCGTATTCCCTGCCGGGCGCGGC
GGCTCGCTCTTCATTCAACCACAGAGTATGGAGTTCGGTAAAGCCTCCGTCGGCGATATT
GAACATGAACTTGCGACGTTCTACTTTGAGATCTTCCTCTTCTTTAACCAGAACAACGTC
ATCGTCGTCGTCCTCCTTCTTCTCCTCTTTTGGTTTCTCAGAGACGTCAGATGCCGCCTT
TTCACTTCTTACATCCTCTTTCTTGTCGGTCTCTTCCTTCAATTCGTCTTTAACTTTAGG
TGACTCTTTGCCTTCTTTCTTTTCATCAGTTTTATCTTCATCTTTTGGAGGTTCCTCGTC
AACGGACATACGTCTTTCGGCCTCTTTCTCGTCTTCTTTTTGTGATTCTTTTTCTTCCGC
ACTATCCTCCTTGACATCGGCCGTATCCATCGGTTCTGCTTTGAGTTTATCTTTAACTTC
CAATTTGTCATCTTTAGTTTCCTCTTTATCGTCCTTGTCAGAGCCAGAGGGCGTGGCGGG
CGTGGCTGCCTGTCCGTGAGGCAGCAAGGTGGGTGCGGGCGAGGGTGCTGCGGAGGTGAT
GGGTGTGGCGGTGGAGGGCGCGGGACTGGGGGCGGCACTCTCACTCGCCCCAGACACTTT
CACCGGCTCAACTGGTTTTCTCACCAGTTCCGGCATGCTGTAGTACCCGTTGATGTGTTC
GAATTCCTGAACCTTTTTCCTGATCAAACTCATTACCCCGATTCGTGTCAAAACGTGCTG
ACGGGATAATCCTTCCCTCGGAACGCCGTCCGCGAATGTTTCCGCGTTGTCGGCGCCCGG
TTCGCAGAGATGGCGCATGAACAACGACACGTAGGCCTTGAAGTTGCGCTCAGACTTCCC
GCGCAGATCTCTCACTAACCACTGCGAGTTGAAAGCGTCCTGCGGTGGCATCCCGTACCG
CATGATAGCATTGAGGAATGACTTCCTCTGCCTGGCGTTGAAGCCGAGAACTTCCATGTT
GCCGCCGACTCTGGCCAGTAATGGAGGCAGCGGTCGGTCGCGTTCCTCTCGCTTTTCGAG
GCGACGCTTACTCCGGCGACTGAGCAGATCTCCATTATCATTCTTTTCATCAAAATCGTC
GTCTTCTTTGTCATCCTCGCTACCTTGAGAGAAATCGGAATTATAGTCCGAGCCATTCTC
TTGCCAAGTAGAATCCTCTCTGTTTTCTGTCTGCGCAACACTTCCATCGTTGTAGTTAAC
TTGTTTACGTACACGTTTGCCTTTCCCAAGCGTCCGCGCTTGATCTTCTTGATGTTGTTC
GTAGTGATGCCTGAGAAGTTTGATCCAGTACGCAGGATCAGTATTCTCTGCTTCCTGTTT
TATAATTTCTGTATCGACTTCCTCTTCACCATCGCCTTCCTTAGTGGAATAACTAGCAAC
TTTGAAAGAGCTAAGATATTCATTAGCCCAAGATTCTTTCTGTTCTATTCCTTCCTTAGA
CCGATCGAGTAATTCACCCACAGCTCTATCGTCATAATGAATAGCCTCCTCTTTGCCTTC
CTCTTCTTTGAACAGCTCTTCAGTACCGAATCGAAGAATATCATCCAACTCTTGCTTAGT
GAAGTTAGCTCCCTTTCCGCCCATGCCCGGTCGCACCACCAAATGCGTTAACATCATTTT
TCGTTTAGCGACTTGGGTGACTCTTTCTTCGACGCTGTTACGTGTTACAAAACGATAAAT
CATAACTTTGTTGGCTTGGCCAATACGATGCGCTCGAGAGAAAGCTTGAATGTCATTGTG
AGGATTCCAATCGGAATCATAAATGATAACAGTGTCGGCGGTCGCCAAATTGATGCCCAG
ACCTCCCGCTCTTGTCGACAAGAGGAACACAAACTGTTGGGCTCCCGGGGCATTAAACCT
ATCTATGGCTTCTTGACGGATCGTTCCCGTGATACCACCGTCAATTCTTTCATACTTGTA
TCCCTCACCCTCCAAGAAGTCTTCAAGTATATCCAACATTTTCGTCATCTGTGAGAAAAT
CAGTACCCTATGACCCTGCTCTTTCAATTGTTTCAACATTTTAGATAGGAGCACGAGTTT
TCCAGAAGCTTTGATCAAAGCTTGCGTGTCATAATTTCCGTGCGGACCTAACGGAGCTTC
CTCCGCTGCGACTGGGAATAGATAAGGATGATTACAACATTTCTTCAGGTCCATCATGAC
GTTAAGTAGTGAAACAGTTTGACCTCCACTCTTGGGGTTCAAAGCTTCATAATTCCTAGT
TAGAATGTATTTATAATATTTCTTTTGCATGGGCGATAATTCTACACGGACAATGAACTC
TGACTTAGTAGGCATGTTTTTCAGTACGTCAGCTTTCAAACGTCGCAACATGTGAGGCCC
TAGCATTTCGTGGAGCCTCTTCACCTGTTCTTCTTTCGAAACGTCAGCGAACTCATTCTG
GAATGCTGCGAGATCATTGAACTTGTCTTTATTTAAGAAATTGAGAAGATGGAACAACTC
TTCCAAGTTATTCTGTAGTGGTGTACCCGTAAGAAGCAATTTATAATTGATGTGATAACC
GGCCAAAAGCCTGAAAAATTTCGACTGATTACTCTTCAGTCTGTGGGCTTCGTCTACAAC
GAGAACTGCCCAATCTATAGATCCTAAGCACGTAGAGTCAATTGAGATCAATTCATAGGA
AGTGAGTAAAACATTAAATTTCACTTGCGACTTGATTTTAGAAGGTCTGCCACCTCTGTT
AGCACCGTCATCAAATGTTAGTTCATTCTCTCGGATCACAGCCCTCGAATCTTTGTCACC
TACATATGTTATACAGTACAAGTCCGGTGCCCATAGCTCGAATTCCCTCTCCCAATTAAT
GATTGTGGATAGCGGCACGGACACCAAGAAAGGTCCTTTAGAATGGCCTTCCTTGAATAG
AGAGTATAGGAATGTAACGGTTTGGATGGTTTTACCGAGACCCATCTCGTCAGCCAGTAT
GGTGTCGATGCCTTGTCCCCAGGAATACCGAAGCCAGTTGAGACCCTCTAGCTGGTAAGG
ATGCAGCTGCATGCCGGTTTCGTACACAAACTGTGGTTGGTCTTCGTATTTCTTATTGAG
ATTACTGGTAGGACGATCAGGCGGCGGATTGTATTTCTTGGGGCGCATTTGTAGGCCGGC
GCTGCTGTCGTCTTCGTCCGTGAGGTCTTTGTTCTTACTTTTGCGACCTGGTTTCTTACC
TTTGAAGCCTTTAGTCTTACCCTCTGACGTTATGAACGCTCGCATGTCTTGATAATAGTC
CATGGCTTGCTTGAGTCCGGCAATGTCTTCATGCTCAGATTCCCACGTGGCCTGATCGTA
TGAGAGATCTCTCCATTTGACTAAAAAGTATGTAGTGCCGTCTCTTGAAGTGCGATGGTT
GATCACACGGTGTACTACAAGCCACTCAGGTTTGACGCCATATCTATAATACTTCTCTTC
GAGTAATTTTTCGTTGTTAGATTCCGTATCCTGTTGTTTATCTTTGAGTCGTTTGTACCT
ACTATCTCGTTCATCGAGGGGCTCTTCAAGTTTAGGCGGTTCTTCGGGATCCGACTTACG
CATGTAGTAACGATACATTAGTGGATGGAACACGTCGAGCTGTAGTTCAGATATCCAGCT
GCAGTGCCAATAAGATCGTTCATGCCACTTCACAAAAAATTCTCTTGAACGCGGAGCCTT
GGACTTGCTTGACTGTTCCTTCCAACGCCAAGTTAAAATTTTGGCCACTTTTCCATCCAA
TGGTGGACAACTGCATCTGGGACATTTCCACTCGCCATCGGGAATTTCTTCAAGCGGCGG
ATTCAAGCAGAACCGATGATACGCTGAAGGACAAGAATCGCAGCATAACAACTCGCCGCC
GTCCTTACAAATTCTGCAAAACTCCTGATGTTCATCGTCGTCGTCATTGTCGGGTGCGGG
CTCGGCCTCGCAGTGCGGACACGACCAGCGGCCCTCCGGCGTCTCCTCGAGCTCGGGGTC
GAGGCACACGAGGTGGTAGGCCCGTGGACATGTGTCACACAGAATTATCTCGCCGCCTTG
CTGACACACCTCACAATAGTCCTGATGTTCGTGCTCTCCCTCAGCACCATCAGGAAACTT
GCTGGTCGTCTTCAACTTCCTTTTCTTTTTAGATTTGTTTCCGATCTTTGTCTTTGCCTT
CTTTTTAGGTAGCGCCGCTGTAGGATCTTCTTCTTTAGGTGGCGCGGCTTCGTCAGCTGC
AGCTGCAACAGGAGGCTTTGTTTCCTCGGCTTCAGCTAACATCTGCTCGAACTCGGCGTC
TGAATCTGAATTTACAGCGCTGCCTTCTTGTTCCTCCTCGCTGCTGGTTCGTTTTCTCTT
GCTGAACTTGATCTTCAGTGTAGGTACTTTAGGCTTCCTGCCGGGCTTGCCTCGTGGCGT
GACGGCGCCGGTCGCATTCTTGGGCTTGCGTCCACGTTTCCGCGGCACAGTAGCGCCTTC
GTCACTTGCTTCTTCCTCCTCTTCTTCTTCGGGCTCCTCTATTGTCTCATCAGTCTTTGC
TTCTTTGGGTGTGCGTCCGGGTCTCTTAGAGACATAGTCAGAAGTAGCAGAAGTATTTGT
ATTCTCTTCAGAGCCCATACTTTGTGGTACACTAGTGCTTAAGTGTGGATTCGTTTCACA
GAACATCCGCCATTTTGCAGCTACTAGCATCATTAACTTTGATACTGGCACCTTTGGATT
CTCTTTAACGAGCATTGGACGAACATGTTGTTGAAACAGTTTGTATGTAGTCAAGTTTTC
GTAGTCCGCATCCGCATATTGTATGTCAACATCGGTAAGGCCGAACGAGGAGCACACCTC
CTCGACTGTTGGCATACCAGAGCCAGAGTCTGATGCTGTAGTTGTGGATGGTGTGTTGTG
TTTGCTACTTCGACCTTTACGGGATTTCTTGCTTGAAGAGACAGCGCTCAGTGCATAATC
ACTGTCACCTTCTGCTTCCATCTCGAGGCCAAAATCATCATCATCTTCACTTTCATTCTT
TCGCTTCTTCTTTTTCTTTCTTCCCTTTTTTTCTTCTCCTCTGGCTTTCCTTTTCTTTCC
CTTTTTCTTTTTTCTACCATCTTCAGGGGAATAATCTTCATCTTCCTTTGGTGGAGCCTC
GTCACTATCTCCGGAATTGTCATTTTGACCCTCACCTTCCTCTACTTCCTCATCACCTGC
AAAAGAGCCGTCCACTTCCTCATCTGATGCCATTTAGATTACTATCAAACACAACTTGGA
ATAAGATGATAGATTTTTGGCTAGAAAAGATAAAGGACGCGCAGTTTTTGCGACAAATGG
TAATTAATTCAGAAATTGATGCCGCCGTCACTTCTCGACGAGCCAG
(6346 bp)

- SilkBase 1999-2023 -