SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp12004_c0_seq1
Scaffold_idBomo_Chr1
NCBI non-redundant
(nr)		PREDICTED:_insulin-like_growth_factor_2_mRNA-binding_protein_1_isoform_X1_[Amyelois_transitella]
Ontology
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006417 P regulation of translation
GO:0006810 P transport
GO:0010494 C cytoplasmic stress granule
GO:0010610 P regulation of mRNA stability involved in response to stress
GO:0010976 P positive regulation of neuron projection development
GO:0017148 P negative regulation of translation
GO:0022013 P pallium cell proliferation in forebrain
GO:0030027 C lamellipodium
GO:0030175 C filopodium
GO:0030426 C growth cone
GO:0030529 C ribonucleoprotein complex
GO:0042995 C cell projection
GO:0044822 F RNA binding
GO:0045182 F translation regulator activity
GO:0048027 F mRNA 5'-UTR binding
GO:0048471 C perinuclear region of cytoplasm
GO:0051028 P mRNA transport
GO:0070934 P CRD-mediated mRNA stabilization
GO:0070937 C CRD-mediated mRNA stability complex
GO:0097150 P neuronal stem cell population maintenance
Transcript
Level		FPKM:2.59 TPM:2.60
ORF EntryO_BomoSK10001_complete:A_BomoSK_comp12004_c0_seq1
Sequence
(Nucleotide)
GGCGCGGCGGCGTCCCGGCGCGCTCGCCTGCGCCACCATGGCACGGATGCGTCGCTGCGC
AGACTGGACGCTATAAAAGGGGCCCACAATGTGAACGGTGGTCTCGTGCTCTTGTCCCTG
CGAGCCGGGCTGCTGCTGCTGCTCGGGTAGCTTGATCAGCGAGCCGGTCACGCGCTGAAG
CTCCCTCACGTTCTGTCCGCCTTTGCCGATGATCCGACCCACTTGCGACGAGGCCACGAC
AATTTCCACAATCAGCCGCACGTCATCCGATCCAGACATAAAACCTTCTTCCCGCATCTT
TTCAAAGATAAGATACTGCGCCTTCCATTGCGCCTCAGGACTACCGACAATGGTAACCTT
GCGCTCTTGCTGTGGGTTCTGCGGTTCCTGTTGCTTTTCTTGTTCCAAAGGCGCAATCTT
AACAGAAGCATTGCTGAATCTAATAATGTTGCGAATGTGCGAGCCCTTTGTACCGATAAT
CGCGCCCACAGCGTTGTTTGGGATGTACAGATAGGTTGTTTCCTGCGAGTCACCGGCACC
CTGCTGTGCCCCAGGGCCGGCCAGCGGCGCATACATCGGCGGCTGGAACGGTGGCGGAGC
TCCACAGAAACCACGTCCAGTCGACATCATAGCCATTGGGTGCAACCCAGGGAACATAAT
GCTTTGCGGCGCCAGCACCTGCAAATCATTTTCGTAGCTTTGACGCAATTTGGCTGAAAT
TTGCGATTCCGCCTTGGCCATGTTCTCGATGGAGCCCTTAACGGTTATGATTCTCTCCAA
ATTGAAGCTATTGATATCATTTATAGAGGAGACAGTGATCTTTGTATCGGTCTCTTGCAT
AATTCTCTTGATGGTGTTGCCGCCTTTGCCGATGATGCGTCCAATGAGATTATTATGGGC
CAAAATCTTCAGGCATATTTCGCCTTTATTAGTATTATTGGCCTCCTGCTGCATTACTTC
AAGGATTCTCTTGCAGGCATTGGTGCAATTCTCGGGATTCCCATAGATGGTAATTGCTTT
TTCCAGGGAGCCGACATTATCCTTCCTGTGTACGTCAACGCGAGCACGACTCTGCTGGGT
GATGAGTCGAATGGTACTGCCCTGGCGACCGATGATAGCGCCGACCATGTCGCTCTGCAC
CAGCAGACGCAGTGGGAAGTCGGTGGGGCGCGAGCCACCGCCAGCAGCGCCGCCTCCACC
ACGGCCGCCACCAGGGCGACCGCGACGACCTCCACGAGCATTCTGCTCTGCTGCCTCCAC
TTTTATACGACAACCCTCCAATTCACATCCATTCAACCCGTTTATGGCTTGCTGCGCCTG
CTCTGGACTCTCGAAGGTGATGAACACCGCTTGGGTGTTGGGATCGCGGGTGTTGGCTTT
GTCGCAATGCTGCACGTTGCCATACTGTGAGAGCAGTGGCTCGATGTTATCGAAGCGGAT
ATGCAGAGGTAGCCCACTGATGAGTACCTTTGAGGATCTTTGATCGTGGAGATCGTCTTG
TTCAAATATTTGATCATGGTCCTCTTGTGATAAATTAAGCTCGAACTGTTGCTCCATTGG
ATTAGACATTATCACACTTGAATAAATTTTGAAGGCTTTTGAGTACCGCGTTTAAAATTA
AATCCGGCTTGCGTTTGACACGCAAGATAAAAAAAAATCACGCTTACAATCAGAAAAATC
GGCCTGAACTTTAAAATTTGACAATATTAACAAACATCTAGAAACCACACGTGGGCCGGT
AAGCACGAATATAGTGTTTTTAATTCAGCATTATAATTTTCTGATATCAAATAGAGGTAA
TGAATGGAACGGCACCGAGTGCAAACGGCGTCGATGGACGGTTTTACCGATTACAGAACG
ACGGACTGCGGAATCGTTGCGGAGAAGGGATACAGACGCGTATGGCACGTGTGCACGGCG
TGCGTAAGGTTCGTCAGCTATCGAGATCACTACCCAACTGAGCTGCCTAGCTGATGTGAC
GTGCGTCACTGTAACGAAGGAGCGGCGCCGACTCTATTCGATTCTTCGTACAACCATTTC
(2040 bp)

- SilkBase 1999-2023 -