SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp10403_c0_seq1
Scaffold_idBomo_Scaf298
NCBI non-redundant
(nr)		PREDICTED:_transcription_elongation_factor_SPT5_isoform_X2_[Papilio_machaon]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006354 P DNA-templated transcription, elongation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0016239 P positive regulation of macroautophagy
GO:0019899 F enzyme binding
GO:0032044 C DSIF complex
GO:0032784 P regulation of DNA-templated transcription, elongation
GO:0032785 P negative regulation of DNA-templated transcription, elongation
GO:0032786 P positive regulation of DNA-templated transcription, elongation
GO:0044822 F RNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:1900364 P negative regulation of mRNA polyadenylation
Transcript
Level		FPKM:6.99 TPM:7.03
ORF EntryO_BomoSK7153_5prime_partial:A_BomoSK_comp10403_c0_seq1
Sequence
(Nucleotide)
TTAACTATTTTTTATGTAACAAACAGCAGTATCTGAATATTTCGATAGATTTTTTCCAAA
TTTTAAATGTGATATTGTTGTTCTTGCTCTTGATTTCTTTTTACTCGACTTCTATTCACA
AAGTGAGTTTTCAATTCGGAGCGTCCGTTTTTCGTAAATAATTTAAGGCTGCCTGATTAA
TTTTATTACACATTTAATTAATTCCTAATTTTTCATTAAAAAACTCGAATATTTTACATT
TTTTTATTTAGTTATTTCTTCATTTGAGAAAAACACAAGCAACTTACGTCTCCCACAGAA
GATGAAAATACAATTAACACAATTGTGAGGTATTTACCGGTCGATAGAATTAAGAGGCCA
TCTTGCAAAGATGACGTAGTTGCATGATTTTGATGTCGTCGGTGCCGAATTTGACGACTC
CCTCTTGGTTTTCGATGGAGATAAGTTGTCCGACCGCGTCCCGGTCCTCTCCCGCGATCA
CCTTCACGCGCTCTCCCGCCTGAGGCAGCACCGGCTCTAACAAGTCCGGCGGCACGGACA
CCACTCGCTCCTCCGCCGGTAAGTACAACGCGCACGAGCCCCCGCCGGTCGCACGGACCA
CCGCGGTCTGTGCGGCCAGACCGTCCGCAGCTCCCGCTCTCAGACGCACCACGAGCTCTG
GTGCCGCCCACGCACCCGCCTCCGCCGACTCGCCCTCCGACCGGCCCGGACTGTACGGGC
TGTACGTGTGGTCCGAGCCGTACATGGCGCCGGGCGTCTGCGGAGTGAACGGTCCCGCGC
CGTACGCGTCCGGCTCGTAGTCGAAGTCCGGTCGCGCCGGGGTGGCGGCACCGCTCGGGT
CCCAGGC
(847 bp)

- SilkBase 1999-2023 -