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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoOtmSK_comp4902_c0_seq1
Scaffold_idBomo_Chr20
NCBI non-redundant
(nr)		protein_CASC3_isoform_X3_[Bombyx_mori]
Ontology
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0006417 P regulation of translation
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0016070 P RNA metabolic process
GO:0016607 C nuclear speck
GO:0035145 C exon-exon junction complex
GO:0048471 C perinuclear region of cytoplasm
GO:0051028 P mRNA transport
Transcript
Level		FPKM:3.24 TPM:3.49
ORF EntryO_BomoOtmSK1363_complete:A_BomoOtmSK_comp4902_c0_seq1
Sequence
(Nucleotide)
GCGGCCGGGCCGGCGGTGAACTCGCTTTGACCGGCATATCTGTGCGGTTGCTGGGTCTGC
GCTGCCCCCGGACTAGAGGTCTGGACAGGGGTCTGGGTCTGCGTCTGCGGCTGCGGTTGG
GGCGTGTAGGGCTCAGCGAGGGGGCGCTGCCGCAGGCTGCTGTAGCGCTTGCTGCCGCCG
CGGGGCTCGGCGCCAGTGGTCTGTTGCGGGTGAGGGTGAGAGGTCTGGTTCTGTGGTTTC
GTTTGCAGGGGCGGCGACTTGTTGGGGGCTGGACTCGAGGGCTGCTGGTTCTGGCCGGGA
AGCGGCTTCTTCTTGTTGATGTCCGTGGGCACTGGCCGCTGCTGCGCCACCATAGCGCTC
ACCTTCCGCTGCGACTGACCTTGGCTGTTATTGTTGTTATTGTTATTATTCGCCGGAGCG
GTGATTGTCAAAGTTTCGAGCGCCGGTAATTTCTTGTCCTGCGGCTTCAGGTTCTTCGGG
GGCGTCGTCTTTGTGAACGGCGGCTTGGGCTTCGCGGTTTTGATGGAGGCGTTCCGGCGG
AGCTGGGCGGCGCGCTCCGGGGACTCGCCCGCCGCCGGCTGCGACTTGGACCGAGGCCGG
GGGGCGCGAACCTTCCTCCCTGGTTTCTTAGCGCTAGCTTCAAGTTCAGGGAAGTCCTCG
GGGTTCGGTGGTTTTCTCAGCGGCAACGCGTTCTGTCTTCGGTACGCCTCCTCGTCTTCC
CAGGTACGTGTGTACTTGTTGGGTCCACGACCGTATCTTCTGTTGCGTCTCGCGTGAGGA
GGGGCATCTTCGTTGCGTATGTCGTACCCGTAGATCGCTACCAGCTCGTCACGTGATTTC
GGCATCTGTTCATTCTCGTTGTATTTGTCGTGCGTCCATTTATTGACAATGTCAGATTTT
CGTGGAGGGCGGCGTCGTTCGGTCGTCGTCTCGGAGCCCTCCTTTTTCTCTGAAGCCGTT
TCGGATGTCGTGTTGACAGATTCCTCGCCGCTTGCTGCGGTTCGGTCATCATGCTCGTAG
AATGTTCCTCTCTTGGGGATATACTGAGGATTGCTCCTATCTTCATCATCATCAACTCTG
CGTTCACCTTCCTGTGCCTCTGGATCCCGTTCAGAGTGGTCAGAATCGCTACCCTGCGAG
TCATAATCGGACTCGGGCGGCCCTTCGTTCAACGAGTTATTGTGTTCGATGTCCTGAGAA
GCATCTGAATATTCTCCCGAATCGTCGTGCTCCCGTCTTCGTACCACGGACGTCATTTCG
GCGTCCTCCCGTGTCACTTGTATAACTTCCAGATTGGCGGCTTAAAATAATACAATTAAT
TAAAACGAAGCGGCAAACGCGCTCAGTAGTTTACAGTAGCGACGGTAAAACCCCCACTAG
TTA
(1383 bp)

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