SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoOtmSK_comp4874_c0_seq2
Scaffold_idBomo_Chr4
NCBI non-redundant
(nr)		plexin-B_[Bombyx_mori]
Ontology
GO:0002116 C semaphorin receptor complex
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007165 P signal transduction
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0008045 P motor neuron axon guidance
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0017154 F semaphorin receptor activity
GO:0021602 P cranial nerve morphogenesis
GO:0021610 P facial nerve morphogenesis
GO:0021612 P facial nerve structural organization
GO:0021615 P glossopharyngeal nerve morphogenesis
GO:0021636 P trigeminal nerve morphogenesis
GO:0021637 P trigeminal nerve structural organization
GO:0021644 P vagus nerve morphogenesis
GO:0021784 P postganglionic parasympathetic fiber development
GO:0021785 P branchiomotor neuron axon guidance
GO:0021793 P chemorepulsion of branchiomotor axon
GO:0021960 P anterior commissure morphogenesis
GO:0030334 P regulation of cell migration
GO:0048485 P sympathetic nervous system development
GO:0048812 P neuron projection morphogenesis
GO:0048841 P regulation of axon extension involved in axon guidance
GO:0050923 P regulation of negative chemotaxis
GO:0071526 P semaphorin-plexin signaling pathway
GO:1902287 P semaphorin-plexin signaling pathway involved in axon guidance
Transcript
Level		FPKM:1.75 TPM:1.89
ORF EntryO_BomoOtmSK1338_5prime_partial:A_BomoOtmSK_comp4874_c0_seq2
Sequence
(Nucleotide)
GGAGAATACAGGCATGATGTACCTGCAATTTCTAGTCGAAATTTGATGACACTAGGACTT
GCACAGCTGACATTCTCCAAACAGAGTATGCTGCAAATTGATGTAAAATACAGAGATAAT
TTCCTAGTGCATTATGTGTATGGTTTTAATGCCAGTGACTATGCCTATTTTTTATTAATC
CAAAAACATTCTCACCTCGCTGGTAATGAAGAACTAGGCTATGTATCTCGTTTAGCCCGT
ACATGTGTCAATGATGACAATTATAACAGTTACACAGAAGTTACCTTGGAGTGTCATGTA
AGAGAAGAAAATATTAACGGTAAGAGTGAAATTGTCAATTATAATCTTGTTCAAGATGCT
AAAATTGCAAAAGCTGGAACTAATTTAGCAATGCAACTTGGAATTGAGACAGGGGCCCCA
ATTCTAGTGGCATTGTTTAGCCCATCCAAAAGTATATCAAATGAACCCATGACAAAGTCA
TCTATGTGTGTTTTTTCTTTACAAGAAATAGAAATTAAGTTTAATGAGAATGTTCACATG
TGTTTCAATGGTAGTACGAAGGCACGTAATATGGGCTATATATCAGGGATGATATCTGAT
GGCAAATGTCCAAGCGTTGGTTCCACAGGAAATATTTTGAATTTTTGTGAGGTGGGTCTA
AAAATAAGTGGTCTTTACCCAATTAGAAGCACATCAATTATCAATTGGAATGATACATTA
ATTACTTCAGTTGCTGTGTCAGTTACTGGATTGCATACAGTAGCATTCTTGGGTACTAGC
AATGGTGTTCTAAAAAAAGTATTGATTGATGCAGATAAAGCCTTAGAATATTCTAGTGAG
AAATTGCTTCCAAATGAAAAAATATTACCTGACACTACATTTTCACCATATCAGAAAACT
CTATATCTGCTGGGCTCCCATAACATTGTACAAATACCAACAGAAAAATGTGCAGAACAT
GGAAATTGTTCTGCATGTCTTGAATCTAATGATCCTCATTGTGGATGGTGCTCCCTAGAA
AAAAGGTGTACGATACAAAGCATGTGTCAGAAAGGCACATTAAGTGCACCAAGGTGGTTA
TCTCAGTATATTGGTCAACAGTGCATTGATTTTGAACAAATTTTACCTGATAGAATATCT
GTGAATGAAGTGACAACAGTACAGCTAGCTATAAAAACTTTGCCAGAACTACCTTTTGGG
GCCAAATATAAGTGTGTGTTTGGCAACGCTCCCCCGATTGATGCAGCAGTTACATCTAAT
GGGTTAGCTTGTCCCACACCAGATGCAAAACATAGACCTAAAATTCCAAGTAATCAAGAT
CATGTCAATGTGCCTCTGTCAGTTCATTCATCAGAAACAAATAAAGATTTTGTTTCGCGG
AACTTTGCTTTCTATGATTGTTCCAGACACTTAACATGTCATTCTTGTATTACGAGCGAG
TGGGCATGTAATTGGTGTATTTATGATAATGTGTGCACACATGATACCTCAGCTTGTCAA
AGAACCATCATTAGTGGTGAAAAGAATCCAACCAAACTGCTTAATCATGGTATTGGACAT
TGTCCTAGAATAAGGCAGTACAAAAATCCAATTCTTTTGCCCTACAATGTTCCTAAAGAA
TTAGAACTGGAAGTTGAAAATCTGCCTCATCTGCAACCTGGTCACATAGGTTTCCAGTGT
GTTGTTACAATTGAGCAAGCAAACATGATATTGCCTGCACGAATAGAATCAAATCATTAC
ATTGTTTGTGATAAAACCACTTACTCATATGAAGAAGATGTAGGTGAATATAATGTAAGT
GTAAAGGTTGTTTGGAATCATAATCATTACATAGACACAGTTATGATAACGTTATATAAA
TGTGAAATATTAGGATCACACAGAGAACATGCTGATTGTTCACTTTGTATCACTCGGAAT
TCTATATATCAATGTACTTGGTGTGGGAATTCATGTTCATATAGTGAATCTTGTTTAGAA
ACTCCTGTAACAGAATGCCCAAAACCTAGAATTGATATGATAAAACCATTAAGTGGACCC
ATAGAAGGTGGCACAACTGTAACTATAGAAGGAAGTAATCTTGGATTAAGAGTTGAAGAA
GTCACAGGAAAAGTTCGGATTGGTGATGTTTTATGTCAAATTGTAGATTTTGAAGTATCA
GTTAGCATAACTTGTCGAACAGGACCATCCAATCATTCTACAGTTGCCCCTGTGATAGTT
GAGAATGACTCGGGATATACTGAATCATCTGTTATGTATAGTTATGAAAATATAAAGTTG
CAAGCAATTTATCCCACATTAGGGCCAGTTTCAGGTGGGACTCAATTAGCTATTGGAGGA
GAACATCTTAATATTGGATCTTCTGTCAAGGCATTTTTAGATGATCTACCATGCTCTGTT
AATAAAACACAAACGTCCAATAGCAGACTGATATGTATAACACCTAAAGCAAACTTTCCA
CACATTATTCACACGCTGACAGTCGTTATAGACAATGCTAACAGAACTTTAAAAGGTGAC
CTTTTTAACTATACTGCTGATCCTACCATAATGGAAATAAAGCCTTTAAAAAGTTTTGTA
TCTGGTGGTAGAATGATTACTGTGCATGGTACTAATTTACATACTATTCAGAAACCTTTA
ATGAAATTGTATTATGCGAATGAAGAAATCCCAGTTAATCATACAGAATGTAAAGTTTTG
AGCTCAAATCAAATGGAATGTCCAAGCCCAGCAATAAATACAAAGTATGTAGAGATTCTG
CAAGCAACAAAATCACAAACCAGCACTCCTCAAATAGCGATGAAAGTAAGTTTTGTGATG
GATCATGTGGAAACAATGCAAGATCTTAAAAAATATTTCAATCCTCCACGAACGCATATG
GTATTTGTTGAAGATCCACATGTGTATCAGTTTCCTAATAGAATAAAATCATATAAAGGT
GACCCACTAGTAATAGAAGGCGAAAATCTGATAAGAGCCAGTGATGAAACCGATGTTGTT
GTAACTATCGGCACACAACCATGTAATGTGACCAGCTTAACAATGCAACAGCTCCTATGC
ACACCTCCCGAAGTACAACCATCCAATACAGACGAAAACGGAATGCAAACCACAGAGAAA
AGTTTACCATTAGTAGTTGTCAAAGTTGGAAAGAACTTGCGTTTTCCAATAGGCTATCTA
CATTACGAGCTTTTGAGGAATTACAATTTTCCCCCAGAAGCTATCGCAAGCATTGCGGCT
GGAACTTTTTTCTTGGTACTAATATTTATGATTGTGTTGGTGATGTACAGACGCCGAAGT
ACGAAAGCCGAGAGGGAATATAAAAGAATACAAATTCAAATGGATACGTTGGAAAGCAAT
GTACGATTAGAATGCAAGTTAGCATTTGCAGAACTGCAGACCGATATGTCAGATTTGGCA
GCTGATTTAGAACACTCAGGTATTCCAACATTAGACCATGTTAATTATGTGATGAAAGTA
TTTTTTCCGGGAGTCTCCGATCATCCCATATTGAATGTTCAAAGACAGTTCATTAATGCT
CCACGGACCAATTATGATGCAGCTATGTTTCAATTCGAGCAACTATTAAATAATAAGTGT
TTTTTGCTGTCATTTATAGACACATTGGAAGCGCAGAAATCTTTTAACATAAGAGACAAA
GTAAATGTTGCTTCGCTTTTAATGATTATATTAATGGGTAAAATGGAATATGCTACAGAC
ATCCTCAAATCTTTGTTGTTACGGCTCATTGATAAATCAGTTTGCAGTAAACATCCACAA
CTTATGTTAAGAAGAACGGAAAGTGTTGTAGAAAAAATGTTGACGAATTGGATGGCTTTA
TGTATGTATTACTACTTAAAAGATTATGCTGGATCTTCATTATTTTTGTTATTTAAAGCT
ATAAAACATCAAATCGAAAAGGGAGTCGTCGATGCTATAACACACGAAGCTCGTTACTCT
TTATCAGAAGAGAAGCTATTAAAAGAGCAGATTGACTATCAGACTGTAACCCTACACATT
GTTCAAGACGAATTTGATGAAAAAGTTCAGTGTAAAGTATTAGACTGTGACAGTATATCA
CAAGTAAAATCGAAGATACTAGATGCTCTCTTCAAAAATACTCCATTTTCACTCAGACCT
GCTGTCCATGAAGTTGATCTCGAGTGGCGTCATGGAAGAGGTGGACATGTTACGCTTCAA
GACGAGGATGTCACTACTAAAACATTAAATGGATGGCGAAAATTAAATACATTAGCCCAT
TACGGCGTTAAGGAATCCGCCATAATGTCGTTAATATCACGACAAAACGATAGTTTCAAC
ACACCTTATAAAATACCATGTAAAAATTGTACAGGAATATACTGTTCGAATTCACATATA
CGCGTATACAATAGCGACATTACTGATCAAAACGTGCATTATTATCATTTGGTAAAACCG
ATCGAATATCAACATATTGTCAACAAATCATCTGAGCACAGCCACAAAGCCATTCCAGAA
ATATTTCTCACAAGGCTGCTATCTACTAAAGGCACAGTACATAAATTTGTGGACGATTTC
TTTGGCACCATACTCACAGTAAACGAAGTACTGCCGCCCGCAGTGAAATGGCTATTTGAT
CTATTTGATGATGCAGCAAGAGCTCATGGTATTGTCAATCCAGAAGTCGTCCATGCTTGG
AAGTCTAACAGTTTGCCACTAAGATTTTGGGTGAATCTCATTAAAAATCCTGATTTCATT
TTTGATATAAATAAAACCGCCACTGTAGACTCCTCTCTGTCCGTGATTGCGCAAACTTTT
ATGGATGCATGTTCATTATCAGAACATAGACTTTGTAAAGATTCGCCGTCAAACAAATTA
CTCTTTGCAAAAGACTTACCCACTTATAGAGATATGGTCATAAGGTTTTATCAAGCAGTT
TCTCAATTACCACAAGTTACAGACCAAGAAATAAGCACGTCTATGCAACAACTCTCTGTG
GAACAATTAAACGAGTTTGATACTCTATCAGCCTTAAAAGAGTTATATATTTATGTCAGT
AAATATAGAGAACAAATTATGTTAGGATTAGAAAATAAAACACACTTAGCTCGTAAATTA
GAAAATACAGCGTGCACCATGGAAGGTGATCCTGCGTCCATGTGCTGACTATATGGCAGT
ATCGATTTAATTGCATTTACATAATTTATTTCTATGAAATCTATTTTAAGAAAAAGCTTT
AATTTATTCTGAAAATACTCAGATTCAAAATCATTAGTATTTATAAAAGACTGTAATCTA
AT
(5282 bp)

- SilkBase 1999-2023 -