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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoOtmSK_comp4407_c0_seq1
Scaffold_idBomo_Chr5
NCBI non-redundant
(nr)		probable_RNA_helicase_armi,_partial_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000578 P embryonic axis specification
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0007275 P multicellular organism development
GO:0007293 P germarium-derived egg chamber formation
GO:0007318 P pole plasm protein localization
GO:0007616 P long-term memory
GO:0016246 P RNA interference
GO:0016787 F hydrolase activity
GO:0030424 C axon
GO:0030425 C dendrite
GO:0031023 P microtubule organizing center organization
GO:0031047 P gene silencing by RNA
GO:0032508 P DNA duplex unwinding
GO:0043025 C neuronal cell body
GO:0043186 C P granule
GO:0045202 C synapse
GO:0046843 P dorsal appendage formation
GO:0048477 P oogenesis
GO:0070725 C Yb body
GO:2000002 P negative regulation of DNA damage checkpoint
Transcript
Level		FPKM:3.67 TPM:3.96
ORF EntryO_BomoOtmSK1004_3prime_partial:A_BomoOtmSK_comp4407_c0_seq1
Sequence
(Nucleotide)
ATTCGTTTGTGTTGTAAAGAGGTTTATTTATACGGTTGGTTCCTTTTAAGTAGCGATTAA
CATAGATAGGTATTAATACACATAATACGCGAATTTATGAGGAAAGGATTTGTAGTATTT
TGTACTAGTAATGTCTACATCTAGCAATCTTTCACAATCTACCTATTCCTCATCTGAAGC
AGAAACTCCGCAAGTAACAACACAAAACAGAATACCAAATTTTGATCAATCATTAAACCA
TGTCCACCTTGGTCACAGCATAGAGCAATCTAAACACTGTGAAAAGAAAGAAATGCATCA
GAAAAGAATACAGACTTTGAGAAAGGAACTTGAATATATTAAGTCAACAGAATGGGAATT
CGAATATGATAAAGGATTTGCGCAATAAAAACTCGTTGCCATCAATTTAATTTTCATTAT
ATAGTTATTGTTGAAGTAAAAGAAAAATGTTTTCATACATGTCTACATTATTTAAATATT
TGTTTTCTAAAAACTCTGAAGAAGATGACAATGAAAAAGAAGATTTTTTAGCAGAACAAT
TGTTAGATCTGGAAATAATTAATGAAACTCAAAATGAATATGATAATAAAACAGAAGCTC
ATGAATTTCCCAAAAATACAGTTTGCTTCCAAAAAACAGGAGTCATAACCTGCATAAATA
CCTCAGAAATTGTTATTGACGATTCACTGTATTTTGATGCTCAGTCTTGTACTTTGGATT
TAAAATTTAATGATCAAGTTCTGTACCTTGGTTACAAAAACCAAAATGATTCTACAGTTG
TTGTCAGAATATTAAAGAATTTAGGAGCATTTTGGGACAGTGGAAGAGATATAGAGGAAT
CTGAAGAAACTGTCTATGGTATCATTGAACATGTAGTGATTGGAGAAGTTGATGAGAGAA
AAAATAGATATGTGTACATAAAAGACAGTGATATAAAATTTAGCTTAGATGATGTTGCTT
CAAATTTAGTTCCAGTCAGTGGTGACTGGTTAGAGTTGAAATGCAGTGTTCAGTGGAATG
AAGAAAAGCCCACTGATATTTCTCCAAGCCAGGTTTTAAAAGTGAAATCAATTAGGCCCT
TGAGAAGTAAAATCAAGAATGTTATCATTGATGAATGGTTTGGTGATTATGGAATATGTG
ATAAAAACATATATTTTAATAGACAATCAATGCAAGATGGGAGTGTACCACAAAAAGGGA
ATAATGTGATGTTAGAAGCTATTGAAAGCAATCAAGGATTGTGTACATGGAGAGCTACCA
AAGTAATAACTATACAAGTTAGTGAATTAATTGAAGATGTTGATAACACACACATTGATG
AAGAAAATAACAGTTTGATAATAGAACAAGAACAACAGATAAGTGTCACTCATCCAATAG
ATTTTGAAAATATAAATTTTAATGAATCAAAATCAATGGTAATAACTATTTTAAACAACA
GTGGCCAAATGCATTACATTAATAAGTGGATTGTTCTCAATAAGAAAAAGGACTCACAAA
TAAATCTTACGCCTATTTTAACAAAACCTTGGAGACTTTACCCACAGCAAAAGTTTACTT
TGACTATAACATGCAGACCAAAATTCTTAGGTAAAACTAGGGAACATATAAAAATTCTAT
TTAAAGGGTTTCAGATAGATAGGTATGTTAATATTCAGGTGGTAAATGATCTGTTTTTAA
ATAAAAATGCCCCACATAAAAGGAAGACAGTGCAAGAGAGCATAACGAAAATGAAGGAGA
TAATATCAGAAAACAACAATGCATTCATGCCTGGTGTTAAACCATTGAAGCCTCCAAATT
TTATGGCAGTTCGACTTGGCGCATTTGCTATTCCATCTAAAGTATGGGCGGCAGTACTAG
GAGATTCCGAACAAGCAGCATATAGTCCAGACTTTGATCAAATTATAAACAGAATTATAA
GTTTTCTGCCTTGTCTTTTACAGCCTTTGAATATTAATAATTATACAGATAGATGGCATA
CATTACTCTATATGGAAGAGATACAACAGAATATAAACATGCGAGTGTATGATTTGTCCA
AAGTCTTTTTGATAAGGTGTCAAGAATATCTTGGTGTTGAAATAAAAGAATTATCAGAAA
AAAGACCAAGTTTAATGCTTGGGGATAAAGCAATAGTCAAAGACATCTGGGATAGCAATG
CACCTGCCTATGAAGGTTTCATACATATCATTAAAGGAGATGTAGTCCTTATGAAATTTC
ATCAAAAATTTCATGAATCATATACAGGGAGTGATGTGTCCATAGAATTTCATTTTAGTA
GGACAATGTTTAGAAGGGCCCACCAAACAATAAATTTCGCAATTACCAAATTGGGTCCTG
ATGTATTATTTCCTTCTCGTGTTTCTACTCATTCTTGTCTGCTTAGTCAAAAAAGGCTAA
GTACAATCAAATGGTTCAAGAAAAATTTGAATGATTACCAAAAGTCTGCCGTTTTAAACA
TCCTTCAGGGAGAATGTCGTCCGCTACCATACTGCATATATGGACCTCCAGGAACTGGAA
AAACTGTTACTGTAACAGAATTAATTCTACAAATATTGACACAGTTTCCTGATAGCAGAA
TTCTAGTAGCCACTCCTTCTAATAGTGCCGCTAACCTCATCACTGAAAAAGTTATTGAAT
ACAGAGAAATGTTTTCGGATTCAATTTTGAGGTTGATAGCACATCACCTCGTAAATTCTG
ATAATCTTCCAGAATCAATAAAGCCTTTTTGCTCAACTTTAGATTTATCAGCAGAAAATA
CTAAACGAAGACAAATAGAATCAGGAACAAATTCGAGAGGCACTTCGTTTATTGGCAGAC
ATCGTGTCACTATTGGCACTTGCTACTGTCTCAGTGGGTTGATACAGCTAAATTTACCAA
AGGGACATTTCACACACATTGTGGTTGACGAAGCAGGTCAGGCTACGGAACCAGAAGTTA
TGATTCCTCTAATACTAGCAGATAAAGAAAGTAGTCAAATAATTCTAGCCGGCGATCCAA
AGCAGCTTGGCCCAGTTATTTTGTCGAAATATTGCAAAGAACTGGGCTTGGATGAGTCAT
ATTTATCTAGAATTCTGGAAATGTTTCCGTACCAAAAAGATTACGACGCTTATAATTTAA
CAGATGGATTTAACCCGAGACTTGTGACAAAATTAAATCACAACTATAGATCATTACAAG
AAGTTTTGCAGTTGCCAAGTGCAATGTTTTATGAAGCTTCTTTAGTTGCTAAACTTGACA
GAACTTCACCATGGGTAACGAAACTACTGAAAGTCGTTTCGGAAATATTTCAAACAGCGG
ATTCTGAAACGGGAGGTATATTCATGTATGGCATCAGAGGTTGTAACGCTAGAGCTGAAG
ACAGTCCATCATGGTACAACCCACAAGAAGCTTCAATGGTGGCACTGACCGTCTGCAAAC
TATATAAAAAAGATGTTAAACCTGACGATCTTGGGATAATAACACCTTACATAGCACAAA
TTAAATGTATACGCCTGTTATTTGACGCGATGGGATTGCCGCAGCCTAAAATAGGAACCG
TGGAAGAGTTTCAAGGGCAAGAGAGACCTATTATTTTAATATCAACGGTGAGATCTTCGG
AATCGCATTTACAAGAAGACCAAAAGAATTCATTGGGCTTTGTAAGAAGTGCGAAAAGGT
TAAATGTTGCTCTTACGAGAGCTCAAGTGGCGGTCATTTTGTTTTGTGACCCTCATCTTT
TGTGTGTTGATCCATTATGGATCCAAGTAATAAATAGCACAGTTCAAAATGATAAATACA
TTGGGTGTGATTTACCTCATATTGTAAACAATTTACGAAATAAA
(3824 bp)

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