SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoOtmSK_comp14768_c0_seq2
Scaffold_idBomo_Chr15
NCBI non-redundant
(nr)		E3_ubiquitin-protein_ligase_TRIP12_isoform_X4_[Bombyx_mori]
Ontology
GO:0000209 P protein polyubiquitination
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0009790 P embryo development
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046966 F thyroid hormone receptor binding
GO:1901315 P negative regulation of histone H2A K63-linked ubiquitination
GO:2000780 P negative regulation of double-strand break repair
Transcript
Level		FPKM:2.04 TPM:2.20
ORF EntryO_BomoOtmSK13721_complete:A_BomoOtmSK_comp14768_c0_seq2
Sequence
(Nucleotide)
AGCGAGACGGAGCGCGTGGCGCCTCGCCTCGACCGACGCAAGCGCACCGTGCAGCGACAC
AACGTGCTACGCCAGGCCGAACACGTCATGCACGAGTTCGCGCACACCAAGGCGCTCCTC
GAGATTCAGTACGAGAACGAAGTCGGCACCGGTCTCGGGCCCACCTTGGAGTTCTACGCG
CTGGTCTCGCAAGAACTGCAACGCGCGGATCTCGATCTTTGGCACGGCAGCGAAAACTTC
AAACAGAAGCCTAGCTCTTTCGGGGGTGAAATTGTGAAATCGGGCGAAGCGGCGGCCCGC
CTCGCTACTTCGGTACGCGACGGTTTGAACTTGGACGAAGAACGTACGCGCGCCACTTCA
CCGACGGACCGTGATAAAGATGCTCCCGAGCCGGCTGCCTTCGTTTCGTGGCCGTGCGGA
CTCTTTCCGCAGGCGCTAGGTCGCAACGCCCGCGCATCTCATCTCTCTCGAGTCAAAGCC
AAATTCCGCTTCCTTGGAAAGTTCATGGCTAAAGCGGTTATGGATTCACGAATGGTGGAT
ATTCCTCTGTCGGTAACAATGTACCGATGGGTGGTGAACGAAGAACGTTGGCTAAGCTTG
AGCGACGTGCGACACGTGGCGCCCGAACTGTGGCGTTCTCTGTGTCGTTTACGGCGCGTC
GCCGATCGCGCACAACACATCGCAGCCGACACCCGACATACACAGGACCAGAAGAATCAA
CTTATAAGTAACCTTGAGCTAGATGGATGTCCGATTGAAGAGCTCGGGCTCGACTTCATA
TTGCCCGGAGACGGATGCACGGAACTGCGTCGGGGTGGCAGAGACATGCCCGTCACTGCG
CACAATTTGCAAAATTATATTGATCTCGTAACTCATTGGCTACTTTTTGAAGGTGTATCA
AAACAGATGGAAGCTTTCAAAGAAGGATTTGAGTCGGTATTTCCTTTGAGTAACTTAAAA
ATATTTTATCCTGAAGAGTTGGAACAAGTGTTTTGCGGAAGTCCTTCAGGTGGTCGTGAC
CAACGATGGGATCCACGTATGCTGGCGGAATGTATTCGTCCGGATCATGGATACAATGCA
GAATCGCGGGCTATACGCATGCTTATTGATATTTTGGCTTCGTACAACCGTGAAGAACAA
CGACACTTCTTACAGTTTGTTACTGGAAGTCCAAGGCTGCCAACTGGTGGATTCAAGGCA
TTGAATCCACCACTAACTGTGGTGCGTAAATCGCTGGAGTCTTCATTGGATCCGGATGAA
TATTTGCCATCAGTGATGACATGTGTCAACTACTTGAAGCTGCCAGACTACAGTAGCGCT
GAGGTGATGCGCGCTAAGCTACGGCTCGCTGCTTCTGAGGGACAACATTCGTTCCACCTT
TCATAATTGGCTCCAAGTTTCCTCTTTTACTGTGATTACATATATCGCCCCCTTTGTATA
CACGTGTGAATGCGGTTAGTGATATCTTATTGTAATTTTGTTATAGTCAGCAGTGTATAA
GCTCTGGACAAATGTTTATGTGCAATCAGAACCTATATTTTATAATGTGATGGACACTGA
AAGTGCGGCGTTCTTAGTTTTGTTCATATTTTCGATTCTTTTAGATTACATAGATATGTT
TATATCATATTTTGCGTTAATTTAATGTGATAGCTTTGTATATTTCTTTTTGAATACACC
AGAGTGACGCTCTTTAGATTAGATGTGGCGTGGATGTAGACTGTGGCAAATATAATATAT
CTAGATGGCTATTTTATCTGTTTACAGAAAACATTTCAAATAACTATTGTAACTCACAAT
TTTCCCAAGAAGTCGATTTAAATAATAATTATATATGGTAAAGCTGTAAAAGCTTCAGTA
ATGTATGTTAGAAATGTACTGTCACTTGATGGGGTCACTGATGGCCTCTAACTTTATATT
GTCCTCCTTGGAGTGTCCTCTGAATTATATGGCATTTATTACCAAACGGTGTATGTTTTT
GATTCAATAAGTATCATAAATGAGTAAATGAAAAGTGCAAAGTTAATGTGTAACAATTCC
AATAAACCATATAATAATATCAAAATTTGTCTTTATTACCACTGTCTTACAAAGGTATAC
ACACCATGAACAACAGTATTGAAGCATCCAACCAATATTCACATCCAACCTGTTGGAAAT
GAGTAATTTACAATAATTAAAAATAATGCACGTTTATTTAGTGTTTCTGTGAACCCCAGT
AATGAAAAACAAGCGAACCATCACATATTAATATATATTTTTGTTTTATTAAAAACTGAA
TATTATTAAAATATTCTTTCCTTCTATTCTGCATTACAATGCATTGAAAATGAAGAACAA
ATGAATATGCAGGTATTAATCTTAACTACATTATAATTCAAGCAATAAAAATATAATCAA
AGTCTGATATGAATCAAATTAAAACTTAAAATATCACAATATATTTCATACTACATTTTT
TATATGAACCTATCCACCATAACTAATTTCTACTTTAAAAGAATAAATAGCTTCTGATTT
AAGACTATTTTCTTAATTATCTAGCAGAAAAATAATTCAAAACACCATTGCAATCCATCC
TAAGATTAAGCAGGTCCCACCGAGAGGTGTCACTTGACGCAATTTTCTATCACCAGTGAA
AGCATGGTAGTAACAAGTTCCACAGAACATTCCCATACCAGCAATAAAAAATGCACCAGC
TACATACGGTCTTCTACACAGAGGAACGGTTACTAAAGCGAGGGTATGTAGAAAATGGAA
TCTATTGGCAGTTTCAAATATTTTCTTCAAGTCGTCTTTAGCCTCAGTCTCAGGGAAAGT
TCGATGTGCTCCCATAGCACCAAGGATTACAGCAGCAGCACCACTTAGTCCTGCCAGCCT
AACAAAAGGACCGGCCTCTTGGGCAAGTTGCCACAATGGAGCTCTTATCATTATGGTTGT
TGGTGGTTTGTCCACTGAGCTAGATTTAAAGATTCCCTTTAAATTAATTTATAATTTCAA
TAAGAGAACAGAAATCCGTGTTTATTTTAGTTTTTGATAAATTCATTCATTAATCGTTAT
CATCATAGAACATT
(3074 bp)

- SilkBase 1999-2023 -