SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoOtmSK_comp14636_c0_seq4
Scaffold_idBomo_Chr15
NCBI non-redundant
(nr)		extended_synaptotagmin-1_isoform_X1_[Bombyx_mori]
Ontology
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005544 F calcium-dependent phospholipid binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0006897 P endocytosis
GO:0008289 F lipid binding
GO:0008429 F phosphatidylethanolamine binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031210 F phosphatidylcholine binding
GO:0031227 C intrinsic component of endoplasmic reticulum membrane
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0035091 F phosphatidylinositol binding
GO:0042802 F identical protein binding
GO:0044232 C organelle membrane contact site
GO:0046872 F metal ion binding
Transcript
Level		FPKM:3.46 TPM:3.73
ORF EntryO_BomoOtmSK13398_complete:A_BomoOtmSK_comp14636_c0_seq4
Sequence
(Nucleotide)
GTTCCGTTTGACTGTTCCGATAAATACGCCTCACCCCTAAACTAATATTCTAATACTGAA
TAAATTGATAGAGTTTTATCCACTGAAGTAGGAAACCTAGGTCTATGGTTTTAACTTACC
AAAACATTGAAAGGTCGAATTATAATCAGTTTACTGAATTTACAAGCTATCAAAATCGTG
TCTACCGTGCTTTGTATTACGAATTACGAGAAAATATTATCAACGGAATGTAATGATTAA
AATTGGCCAGTGATAATAACATGGCAGGTGCAAGCAAAACTGCCTTACCACCAGGCAGTG
ATGATGGCAACAGTGTTTTTTCTATGATGTACACATTTCTCAAAAAGGTGTCGATTGTAG
GAGCTGTGTACTTAGTAGGTTATATGCAATGGAGCGTTGCGTGGCTTATTGGGCCCGTTA
TATTGTCGGTGATGCGCGATCAATGGCGCAAGGAGAACGAATACAAACGCAACATCGCAA
AGGTCGCTGCACTGTCTTCTGAAAAAGATGTGATACTAGCGAGACTTGACGACTTGCCTT
CATGGGTATTCTTCCCGGACGTCGAACGAGCCGAATGGTTGAACAGGATACTCCTACAAG
TCTGGCCGAATGTGAACAGCTACGCAAAGACTTTATTGAAGGACCTGATCGAACCGGCTG
TCGCGGAGAGTCTGGCCAATTACAAACTCAGCGGATTTAAATTTGAACGTATGATTCTCG
GTACCATTGCGCCGCGGGTTGGTGGCGTCAAGGTTTATGATAAGAATCTCTCGAGGAATG
AAATCATCATGGACATAGACTTATTCTACGCCGGCGATTGCGACATCTCATTCGTACTTC
AACGCATTCGCGGAGGAATCAAAGATCTCCAAATTCACGGCATGGTACGTGTTGTAATGA
AACCTCTGATCTCTAAAATACCGTTAGTCGGAGGACTACAGATCTTCTTTTTGAACAACC
CCTCAATCGACTTCAATCTCGTTGGCGCAGCTGACATACTAGATATGCCAGGCTTTAGTG
ATATACTTCGTCGATGCATCGTGGAGCAAGTGTCCAAAATGATGGTGCTGCCTAACAAGC
TTTCGATCAAACTAAGCGATGAGATTCCAACGGTTGATCTGCGCATGCCTGAGCCGGAGG
GTGTACTTCGCATACATTTGGTTCAAGCTCAGAATCTCATGAAGAAAGATGTTTCTATGC
TAGGAAAAGGCAAGTCAGATCCGTATGCAGTTATAACTGTGGGCGCCCAGCAATGGAAAA
CGAAGCACATTGATAACAACGTGAACCCGCGATGGGACTTCTGGTGTGAGGCGATAATAA
GTTCAAAGAAGAGTCAATCGCTGCAGTGCGAGCTGTGGGACTGGGACCCTGGGATGGGCA
TTCAGAACGATGATTACCTCGGCAGGTGTTCATTGGACATATCTCAAGTTGTTCGATTTG
GCCGCTTGGACACTTGGCAGACCTTGCAACAAGCGAAGCACGGTAAAGTCCAACTGAGAT
TATCTTGGCATCGTTTATCCACGGATGTAACTGAGTTAAGTCGAGCACTGACGGAAACTC
TCCTTATCAAGACGGGAGATTTGAGCTCAGCAGTACTCTCTGTTTACATAGACTCGTGTA
AGAAGCTACCGAACGCCCGTGTGCAATCCCGTCCGGATCCTTACCTGATGGTGACGGTTG
GCAAAAAAACCGAAAACACCGCCGTGCAACTGCGAACCGACGATCCCGTGTATGAGATCG
GATATTCTTTCCTCGTCCAGAACCCTGAAATCGACACGCTTGACGTCAAGGTTCTCGACC
AGAAAACTGGAAGCCAACTCGGTCAATTGTTTTATAGCATCTCCGCTTTGCTTAAAGAAA
AAGATCTGACGATGCTGACTCAGCCGCTGATGTTGCAGAAATCTGGGCCCGAGTCCAAAA
TCATACTGTCCTTACAATTGAGGATTCTCAAAGAAGCCATAAAAGAGGTCGATATTGACG
AAGAGAGTTTGGAAGCGGCGGTCGCGGAGCCGAGCCCCCCCACCCCGAGCCCCTCCGTGT
CGTCGGCGGCCACCGACACCACGGACGGCGGCGCCTCGCACCCGCGCCCGCAGTCCGCCG
CGCCCTCCGATCCGCCCCCTGTCCAACCTGCTTCATCAGGTGATACTGAGTTAAAGAATA
TTGAAGATTCTGTACAAGACGACGCCTCGCAGAGATCCGTGCCAGAGGAAATAATTGATA
AAGAAGTCGAATCTCCTCAAGAATACCAACCTCCATCTGGACGCGACTCGCCAAAACTCA
TCCACAGGACTTCGTCATTAACTACTTCCGCTGGGGAAGCCGGTCTGGGCCGCATATTAC
TCTCTCTGCGCTATAGTATGCAGAATCAAACATTATATATTGTTGTTCACAAGATAATGA
ATATTCCGCTGAAAGATCCTACAAATGTGCCCGATCCGTACGTTAAATTGTATCTACTGC
CGGGCAGAACTAAAGATTCAAAACGCAAGACAGTGGTGGTAAAAGACAGCTGTATGCCGG
AATATGACGAACAATTCGAATGGGTGATTCCATTAGCTGAGCTTCACTCCAGGCAAGTCG
AAGTCACTGTTGCCACCCACAAGGGATTCCTGGCTGGCAGTCCGGTCATTGGACAGGTTG
TAGTCCATCTAAATCAGTACGATTTCCGTGAAGCTAAAACCCTGTGGTTCGATCTTATGC
CTGAAACATCCCCTAGAGACTAAGAGATGCAATTTCGAAGTTTGATGTACTTATGAATCT
ATTAAATATTAATAACACTACACGAATATAATCTAATAAGTACTATTGTAACTTCAACTG
GGATCTGATGTGCAAATCAATTTCTATATATTGATCTGAATATGTTATAACTTTAATGGC
TTTAAACGATTCACTCATAAAACTCTCAAACACTAATAAAAGAACGAAAATTGGGTCATT
ATGCCATGTAAAAAAAATTGTGGGCTTATGGCCCAATCGTAAGTTTATAATAATAATTAT
AAAACATGCTTTGCCATATCTAACTAGCCTGCAAGCTTATAAAGCTTTTTAAAAATTCAA
GTAATGGAAGCATAATGATTACAATCACGTAATATTATGATAATTGTCACAACCAACCCA
GAATCCATTTACTGTTAAAACTGAAAAAAAATATGAAATTTAATATAACCACAAAAATAA
CTAATTATGATAAATTTTATGTGTTTCCGAATTCAAACTTCATATAATGAATTTGTAGAA
TTTTATTTTCTGTGTTACTATTACGTATTTTGTCATTGTTAAAGCATTAAAATGTTTAAG
ATTTGTTAAAAATTCAGTAAATGTGGTAAGTGCACTTTTTTTATTTAATCAACATAAAAG
TAAAATAAGCAAAAAATCTGATGAAAATACTAGTTGTATGAGCGTTATTATTTCTTATGC
ATTTATTTTTTGCTATATACTTTATACGCTTTAAATGTTTACTTTAATAAAGGTATCTGT
TAAAA
(3485 bp)

- SilkBase 1999-2023 -