SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoOtmSK_comp14636_c0_seq3
Scaffold_idBomo_Chr15
NCBI non-redundant
(nr)		extended_synaptotagmin-1_isoform_X2_[Bombyx_mori]
Ontology
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005544 F calcium-dependent phospholipid binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0006897 P endocytosis
GO:0008289 F lipid binding
GO:0008429 F phosphatidylethanolamine binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031210 F phosphatidylcholine binding
GO:0031227 C intrinsic component of endoplasmic reticulum membrane
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0035091 F phosphatidylinositol binding
GO:0042802 F identical protein binding
GO:0044232 C organelle membrane contact site
GO:0046872 F metal ion binding
Transcript
Level		FPKM:28.07 TPM:30.27
ORF EntryO_BomoOtmSK13396_complete:A_BomoOtmSK_comp14636_c0_seq3
Sequence
(Nucleotide)
GTTCCGTTTGACTGTTCCGATAAATACGCCTCACCCCTAAACTAATATTCTAATACTGAA
TAAATTGATAGAGTTTTATCCACTGAAGTAGGAAACCTAGGTCTATGGTTTTAACTTACC
AAAACATTGAAAGGTCGAATTATAATCAGTTTACTGAATTTACAAGCTATCAAAATCGTG
TCTACCGTGCTTTGTATTACGAATTACGAGAAAATATTATCAACGGAATGTAATGATTAA
AATTGGTTAGTTTGATATTAAAACAATTTTCTTATTTGTTCAGAATACGTTTTAATCACG
AAAACACCTGCAACGCCGCAGTAGTTTAGTGCAGCATGGCCAGTGATAATAACATGGCAG
GTGCAAGCAAAACTGCCTTACCACCAGGCAGTGATGATGGCAACAGTGTTTTTTCTATGA
TGTACACATTTCTCAAAAAGGTGTCGATTGTAGGAGCTGTGTACTTAGTAGGTTATATGC
AATGGAGCGTTGCGTGGCTTATTGGGCCCGTTATATTGTCGGTGATGCGCGATCAATGGC
GCAAGGAGAACGAATACAAACGCAACATCGCAAAGGTCGCTGCACTGTCTTCTGAAAAAG
ATGTGATACTAGCGAGACTTGACGACTTGCCTTCATGGGTATTCTTCCCGGACGTCGAAC
GAGCCGAATGGTTGAACAGGATACTCCTACAAGTCTGGCCGAATGTGAACAGCTACGCAA
AGACTTTATTGAAGGACCTGATCGAACCGGCTGTCGCGGAGAGTCTGGCCAATTACAAAC
TCAGCGGATTTAAATTTGAACGTATGATTCTCGGTACCATTGCGCCGCGGGTTGGTGGCG
TCAAGGTTTATGATAAGAATCTCTCGAGGAATGAAATCATCATGGACATAGACTTATTCT
ACGCCGGCGATTGCGACATCTCATTCGTACTTCAACGCATTCGCGGAGGAATCAAAGATC
TCCAAATTCACGGCATGGTACGTGTTGTAATGAAACCTCTGATCTCTAAAATACCGTTAG
TCGGAGGACTACAGATCTTCTTTTTGAACAACCCCTCAATCGACTTCAATCTCGTTGGCG
CAGCTGACATACTAGATATGCCAGGCTTTAGTGATATACTTCGTCGATGCATCGTGGAGC
AAGTGTCCAAAATGATGGTGCTGCCTAACAAGCTTTCGATCAAACTAAGCGATGAGATTC
CAACGGTTGATCTGCGCATGCCTGAGCCGGAGGGTGTACTTCGCATACATTTGGTTCAAG
CTCAGAATCTCATGAAGAAAGATGTTTCTATGCTAGGAAAAGGCAAGTCAGATCCGTATG
CAGTTATAACTGTGGGCGCCCAGCAATGGAAAACGAAGCACATTGATAACAACGTGAACC
CGCGATGGGACTTCTGGTGTGAGGCGCGTATAATGCAATCCCTCGGTCAGATGTTGGATA
TAGAGGTGTTCGACAAGGACGAAGGCAACGACGACGACAAGCTCGGCAAGTGTTCATTGG
ACATATCTCAAGTTGTTCGATTTGGCCGCTTGGACACTTGGCAGACCTTGCAACAAGCGA
AGCACGGTAAAGTCCAACTGAGATTATCTTGGCATCGTTTATCCACGGATGTAACTGAGT
TAAGTCGAGCACTGACGGAAACTCTCCTTATCAAGACGGGAGATTTGAGCTCAGCAGTAC
TCTCTGTTTACATAGACTCGTGTAAGAAGCTACCGAACGCCCGTGTGCAATCCCGTCCGG
ATCCTTACCTGATGGTGACGGTTGGCAAAAAAACCGAAAACACCGCCGTGCAACTGCGAA
CCGACGATCCCGTGTATGAGATCGGATATTCTTTCCTCGTCCAGAACCCTGAAATCGACA
CGCTTGACGTCAAGGTTCTCGACCAGAAAACTGGAAGCCAACTCGGTCAATTGTTTTATA
GCATCTCCGCTTTGCTTAAAGAAAAAGATCTGACGATGCTGACTCAGCCGCTGATGTTGC
AGAAATCTGGGCCCGAGTCCAAAATCATACTGTCCTTACAATTGAGGATTCTCAAAGAAG
CCATAAAAGAGGTCGATATTGACGAAGAGAGTTTGGAAGCGGCGGTCGCGGAGCCGAGCC
CCCCCACCCCGAGCCCCTCCGTGTCGTCGGCGGCCACCGACACCACGGACGGCGGCGCCT
CGCACCCGCGCCCGCAGTCCGCCGCGCCCTCCGATCCGCCCCCTGTCCAACCTGCTTCAT
CAGGTGATACTGAGTTAAAGAATATTGAAGATTCTGTACAAGACGACGCCTCGCAGAGAT
CCGTGCCAGAGGAAATAATTGATAAAGAAGTCGAATCTCCTCAAGAATACCAACCTCCAT
CTGGACGCGACTCGCCAAAACTCATCCACAGGACTTCGTCATTAACTACTTCCGCTGGGG
AAGCCGGTCTGGGCCGCATATTACTCTCTCTGCGCTATAGTATGCAGAATCAAACATTAT
ATATTGTTGTTCACAAGATAATGAATATTCCGCTGAAAGATCCTACAAATGTGCCCGATC
CGTACGTTAAATTGTATCTACTGCCGGGCAGAACTAAAGATTCAAAACGCAAGACAGTGG
TGGTAAAAGACAGCTGTATGCCGGAATATGACGAACAATTCGAATGGGTGATTCCATTAG
CTGAGCTTCACTCCAGGCAAGTCGAAGTCACTGTTGCCACCCACAAGGGATTCCTGGCTG
GCAGTCCGGTCATTGGACAGGTTGTAGTCCATCTAAATCAGTACGATTTCCGTGAAGCTA
AAACCCTGTGGTTCGATCTTATGCCTGAAACATCCCCTAGAGACTAAGAGATGCAATTTC
GAAGTTTGATGTACTTATGAATCTATTAAATATTAATAACACTACACGAATATAATCTAA
TAAGTACTATTGTAACTTCAACTGGGATCTGATGTGCAAATCAATTTCTATATATTGATC
TGAATATGTTATAACTTTAATGGCTTTAAACGATTCACTCATAAAACTCTCAAACACTAA
TAAAAGAACGAAAATTGGGTCATTATGCCATGTAAAAAAAATTGTGGGCTTATGGCCCAA
TCGTAAGTTTATAATAATAATTATAAAACATGCTTTGCCATATCTAACTAGCCTGCAAGC
TTATAAAGCTTTTTAAAAATTCAAGTAATGGAAGCATAATGATTACAATCACGTAATATT
ATGATAATTGTCACAACCAACCCAGAATCCATTTACTGTTAAAACTGAAAAAAAATATGA
AATTTAATATAACCACAAAAATAACTAATTATGATAAATTTTATGTGTTTCCGAATTCAA
ACTTCATATAATGAATTTGTAGAATTTTATTTTCTGTGTTACTATTACGTATTTTGTCAT
TGTTAAAGCATTAAAATGTTTAAGATTTGTTAAAAATTCAGTAAATGTGGTAAGTGCACT
TTTTTTATTTAATCAACATAAAAGTAAAATAAGCAAAAAATCTGATGAAAATACTAGTTG
TATGAGCGTTATTATTTCTTATGCATTTATTTTTTGCTATATACTTTATACGCTTTAAAT
GTTTACTTTAATAAAGGTATCTGTTAAAA
(3569 bp)

- SilkBase 1999-2023 -