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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoOtmSK_comp14634_c0_seq1
Scaffold_idBomo_Chr15
NCBI non-redundant
(nr)		probable_ubiquitin_carboxyl-terminal_hydrolase_FAF-X_isoform_X3_[Bombyx_mori]
Ontology
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006897 P endocytosis
GO:0007275 P multicellular organism development
GO:0007349 P cellularization
GO:0007601 P visual perception
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008354 P germ cell migration
GO:0008583 P mystery cell differentiation
GO:0009950 P dorsal/ventral axis specification
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0030154 P cell differentiation
GO:0035192 P nuclear cortical migration
GO:0036459 F thiol-dependent deubiquitinase
GO:0045824 P negative regulation of innate immune response
GO:0045861 P negative regulation of proteolysis
GO:0048477 P oogenesis
GO:0050829 P defense response to Gram-negative bacterium
GO:0050896 P response to stimulus
Transcript
Level		FPKM:0.98 TPM:1.06
ORF EntryO_BomoOtmSK13388_3prime_partial:A_BomoOtmSK_comp14634_c0_seq1
Sequence
(Nucleotide)
CCGCCACCCCACGAACACATCGCCAGCAGCTGCTCCGCGCACGACACGCGCACTTGTGGA
TTTGGGCAATCGATCATTAAGTAAAGAGCGGTATCCTGCCACCAAGGTTCGTTAAGCAAC
ATATCCAGTCTTCCGCCGCCAAGCGCCATGCATATAGTCACCACTTCCATACATTCTCGG
ACCAAGGTAACGTCGTCAGGGTGTACAATGCTAGTCATCTCGACAGGTTGCGCCACAGAG
TATCCGAGTGCAAACAATGCCCGGACCGTCGCCATCGTAGGGACGCGCCACCACACTAGT
GACGATACGGAGTCGCTCTCTTCTCCGGCGATCACAACCTGTTCTCCTAATGAATTCGCC
AACTTTTCCGCTACTGCTTTCACGATCATTTCACAACTGTGATTTGGTATAGTGGTGAGA
GCCTCCCTTAAAATAGTAAGATCCATTCTAAAATCTTTGTCCACCGAAACATCAGATCCA
TCTGGCGCCAATATTTCAAATAAATATCCCAAGGTGTACAAAATTAACTTCGCCAGTCTC
ACTAAGGCTAAATAACCTACCCTTCTGGTGTGGGGAGCAGCATCTTTTAAAAAATCCTTG
TCAGAAAGGCATTTTACCAGTAGCGGAGCCTTCTTTACACAGGCCAGCTGGTAATTCCGG
CTACGTTCCAGTCTCGTGTCTGACGACGGCATCACCATGCTGTACAATACCTAAACATTC
AATACGCGTTGCAATATGCCACAAACACATTGAGAATATCTAGTTACCCGACAGGTACAC
ACCTCTATATTGTAAGCTACAGTCGGTGGTGATGGTCCATAAAGCATATCTCTGAGTTTC
GTGTCGTCCCTACATAACAATGCTTCTGTTAATTTCTCCATTGTTAGTTTATGTGCAGGA
CAAATTTGTGATAGCAGATGTGCCGCTTCAGTCAATGGTCCATGCAACTTCGTAATGCCA
ACATGTTCCAATTCTAATATAAATGGTAAGTACCACGAGCCTTGCGCAAACAGAACTCCA
GGTAATGCGTTTTCAGGAGTAGGTGAAAGTGGCGGCGAAGATGTGCTAGAATCACTACTG
GATTCATTCGAGGAACCGCATCCGCCGCTACCACACACTTGTCCATCATAAACCTTAGCG
ACGATCAAAGTTTTATCACGGAGAGGTATCTGTGAAAGTATTTTCTTATCGTGACTAGAA
TCCAATAGTTCACCATTTACAAACAATTCTAATTTGTTAACATAAAGTTCTAATTTAATG
GTACTATCCGAGGCACATTTTAATCTTCTTTGGATCGATGCTCGTAAAGAATGCAATGTC
TCGTTAGAATGCGAAAATAATTCTATATCTTCAATTTGTCTTTGGCCAGTTTGAAAGTTA
AATCTTACTATTATTGTACATTGTCTTCCGCGACCGGCTCTGTAGATAGGCAGTATTTGT
CGCTCCGACGAAAACCTTCTATCACATTCATTAATGTATTCTTGTATGGCACGAATTATT
CTACACATTTTTGTACAAACTTCGGGATTATCTTCTTGCTGTTCCATTTCCCGTTGGAGT
CGTTGCGTTCGTGCGCAGCACTGCGTAAGGAACGACTCGTGGTGCATCGCCGGCGACAGC
TGCGGCCCCACGCACGTGCACACTTCCCGCAACAGCTCTATGCCGCGCGCCGATATGTCG
TCGTCGCATTCCGTTATCACTCTCCATAAATAATCTATTCCTATGAGATCAGCATCGTTG
AGTTGAAAACTTCTACGTTTAATCCTAAGTTTACCTTCTTTGGCATTCACAGCTTTAAAA
AACCTCTCAAAACATTTAATACCGGCATGGGTTAATAAATTAGGCGGTAAAGTCATAATG
TTACGTCGAAAAAAATGCAAGTTGATATTTGGATCCAAATCAGGTTCCTCTCCCATGAGT
TTACTGAACCATCGAAAACAGGCTTCACGGTCTCCAAGGTGCGCTGGCCTTTCCGCTAAA
CATACCCAAATCTGTTTTGCCTGTTCAGCACAAAGCCACAATTGACCATCTTTCAATAAG
AACCGCAAAAAACTAAGTCGTTCATGAACCTGAGCTGCGTGTGGATATCTTCCATCGGGT
AACCAATTCTCCCAATCGATAACACCATCAACTGCAAGTTTATTACGAACTCCATCCATA
TAACTTGTAAGAGAGTTTGTAACCAATATGACAAGGGAGTGCTGCGTTTGTAGCCGGTCG
ATCAGTTCCTGTCTCGTAAGATTAGGTCGCACGCCCGTTCCTCCGCCCGCTTCGTATAAA
CAACAGATTTCTTTCATCATCTTAAGCGCAGGAAGCACCCATTTTTCGTTTGTTTTTAAC
TCTTCTACGCACTTATTTAGCCACAGAGTTTTCTGTGCATCGCGATCTTGACTACAACTG
TAGTCGAGTATTTTGATTAGATTAGCAAGGGCCACGTCAATTATTTCTGTGCATACCTCA
TCGGAATGTGCCAAGTTCCAAAAAAGTACTAAAACCTTGTTCGCCATTACTCCATCTTTA
TCATCTTCAGCAAGCCTTCTTATTACCTCTAACAATTTGTCACTTTGTTTTTTACTTGAT
GAAGCCCAACTAGCCTTAAAACAGTCGAAAAGATGGTCTAATTGGTCAGGGGTAAAATCC
CACGCTAACTTCGACAGTAAATCGTGCAGGTTTTTCACGATAGCTTCATGTTTCCCGTGC
TGCGCCTTCCAAATAGCGTCCAAGTCTTCTGTGGTTAACGAATTTTCTTTGATCATAAAC
CTTAGCATTTTCTCTAATCTGTCCACATATTGAGGTTGATGAAGAGAATCACGAAGCACA
ATGTCCACTACTTTGTTCTCACGAATCCAATTCGTTATGACAGCAGGTGTGAGCCACTCT
GGTTTTGGTTGTTGTGAAAAAGTACTTATAAGTTGATTAATTTCATTCAGTGCTGACATT
TTGCCATTAAATGAGGACATTTGTAATAACCTCAATATCATTTTCAATCGAAACATTTCA
AGAGACTTAAGAAGACTATGATGTTGTGGTGTTTTTGCAGAAACATATTTACAAGCCCTA
ATCAAACAGGAAACGGTATCAGTCTTATTTTCACTACCTCGCGCTTCCTTCTTCAATTCT
TCGTCGGATAAACTTTCTAACAACGTTGGTATGCATTCAAGCACAGGTAATAAGTATGTT
GTAACAGTATGTGCAGTGAGAAGATCATGACAGACACCAAGAGGGCGTAATAAATGCCAG
ACCTCTGTGACTCTTGTTTCAGTTGTAGACTGTTCTAATGATGAAGGCTGGTCGTTACGA
GACTGTGTCATTGAATCACTGTTTTCCCCAATAACAAGAACTGGTTCAATACAATTGGTG
TTAGATGTCTTGCTCTCATCACTTTCTTTTTCCATCATCTCAGACAATACCTTTTCTTCT
GTATTCATAGATGAATTGAGATCAGACTTTTGAAATCCCATTATCTCTTCAAACCTCTCC
CTTAATTTCACAAAGCCGCCTGCTTGACCAAACACATTAATTAGATGGACCAGCCACCCC
CTAGGAGTACGATGATCATGAGACCTAGCAAAAATTTCTATGTCTTGAGAAGGCCCTTGA
CCTGTACCAGTGGTATTTGATGTCACCGAAAGGCCCTCGCTCGTTCGCGATGCATTGAAC
ATATGAAACTTGTTACTGGGGTTTAATGTCATAGTCAATAGATGCAAAAATCTGGGATCA
TCAAGTTTAAGAGCACACAACTTGACTAGCTTCTCACAGTTGGATCTTACACACTGTTGT
ATATTATTTTTCCACGATGATACTGCATCATCTGTTAATATCTTTGTAAAAGATATTGTG
AGAGCATCAGTGTAAAATTTCTGACACGCCGCATTGTGTACATCTTCTCCTTTTGCAGCT
AGTTCTGTTGCAGCGACTAGAAGAGCTTCCAATTCTTGTTCTGGCAGCACTGGTACAACC
CAACGGGGATGTGAAAGTTTGTCTTCCAGTGCCTTTAATTTCGCCTCAGGGAATGCCATC
TCCCCAGGCATCTGGTCTTGTTCTTTCATGGTTATAGTCATTATTTGAAACGCTGTCTCA
TTGCATTACCTTCGTTCTCAGCAAATGTATTAATTCTAGAAAATCCAAAATAATTCACAA
TGATTTCACTAACACTTTTGACG
(4163 bp)

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