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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoOtmSK_comp14624_c0_seq4
Scaffold_idBomo_Chr17
NCBI non-redundant
(nr)		U2_small_nuclear_ribonucleoprotein_auxiliary_factor_2_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000245 P spliceosomal complex assembly
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0008187 F poly-pyrimidine tract binding
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030628 F pre-mRNA 3'-splice site binding
GO:0046833 P positive regulation of RNA export from nucleus
GO:0046982 F protein heterodimerization activity
GO:0051168 P nuclear export
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0089701 C U2AF complex
Transcript
Level		FPKM:1.93 TPM:2.08
ORF EntryO_BomoOtmSK13351_5prime_partial:A_BomoOtmSK_comp14624_c0_seq4
Sequence
(Nucleotide)
AAGTTAAGCTATTATATATAAGTACTGCTTACCAAAAAGTTTTTATTTTTAAACCCAATG
AAAACTCAATTCACATAAATTATGGTTGATTTATGTTTCCCACTAAAAGAAACCTTTTGA
TAATAAAAAAATGGTTATATTATACAACATTCTTCTCTCATTGTGATTTGTAGAGTTGTG
TGTTACAGGTTTTGACCAGACAAAATGGAAATAATAATTATGTTGGTTATGATAAACATA
GAATTCTCTTAGATCGACAAATTCAAGTATTTTGGACTATAATAGTTATTTCAAAATCCT
ACTTTAGGTAATGTTAGGACATTAAAAGAACCATGAGTTTGTTCGTTCCCAGTAGGTAGT
TATAGCGTACTAGATGCCGCAACAATTTCAGGCCGAGATTCAACAGTTGACAGGACTTAG
GCCCCGGTGACGCCAGCAGTGAGCCGCGTTATGTTTTGGTCCGTTTCAGGTATTTTCAGG
TACCCGTAGCGTGGACGAGCGTGTGCGTACCACGCTCGGATGTTCTCAAACAACTCACTG
ATATAGTTTGCTTTCTGCCCTCCCTAGCTTAGATTTGGCACATTCGCGGCCCGCGTGTCA
CTGTTGTCTCTCATTCTCATCTATACGTCTTGTACTTGAACGAGACATCGGCACTTCAAG
GCAAGTCTCTTCCATTCACATCTGATTCTAACATGCGGCTAGACACAGGTCAGATAGCAT
AATTCACTTATGTAATTTGCTGCATTTTGATGAACAGATTTAATGGGAACACAACAATTC
AAACATACAATACAAAAAACATTAGCATTAGAAATGTCTATGCTGATCATTATGAATATG
TAACGTAAATTAATACAATGCTGGGAATTAAAAGATTATTATTTGCTCACTAATTTTGTC
ATGAAACAGGTAAAGGAATTACTCATGTCATTTGGTCAACTCCGGGCCTTCAATTTGGTG
AAAGACTCTTCAACTGGGTTGAGCAAAGGCTATGCTTTTGCTGAATATGTCGACATTTCT
ATGACAGATCAGGCTATTGCAGGTTTAAATGGAATGCAACTTGGAGATAAAAAGTTGATT
GTGCAACGTGCCAGTATAGGCGCAAAGAATTCAACTTTAGAAATGGGATACTTTTCAGCA
CTGACCGGTGCAGCTCCAGTGCAAATCCAAGTGGCAGGTTTGACCTTGGCTGGAGCAGGT
CCACCTACTGAAGTATTGTGCCTTCTTAACATGGTAACACCTGATGAATTGCGTGATGAA
GAGGAGTATGAAGATATCCTTGAAGATATAAAGGAGGAATGCAACAAATATGGTGTTGTG
CGTAGTATAGAAATTCCAAGACCAATTGAAGGAGTCGAAGTACCTGGATGCGGCAAGGTA
TTTGTCGAGTTCAACAGTATTGCAGATTGCCAGAAAGCGCAGCAGACGCTCACAGGACGC
AAGTTCAGTAACAGAGTCGTCGTCACATCCTACTTCGATCCTGACAAATATCATCGCAGA
GAGTTTTAAAGATATATTTTTTTTACCGTCACTTCAACTTCGTCCTGTTGCACTAGCGTG
TAAGAAAATGTTCAACATTGTTTTTGAAAGAAGTTTAATTTTCATTAGTTTACATTAAAA
ACATATAAGAACAAATTAAATTTAAAAATAAATGCTTGTAACGATTCATTGTAAAAGTGA
GTTCTTAACTACCAAATGAACAGATTTAATTGTGATCTACTCAATTACGACTGATAATTA
ATTTTACAAGTTCTATAAATTGAAAATGTCACGTTTTGTTGAAAATAAAAGTTTTTTTTT
TTTCACAAGACCTATACATGACACATGCTAGTAGCACATTCAACAAACGACAGAGATTAA
ATCTATCAAAATGCATGTGAATTGGAGCATCATGCTTTTCGTCACCAATTCACTACAACT
GACATGTTAAGTATTAACTAAAAAGTATATTGCGCGTTTGTAACTGCTATGAATAAATAA
ATTTATCTCGAATCATGTGTTTTTATTAAAAAGTTTCAAATTCGAATCGTTTTAACGTAG
GTACATTATAAAAAAAAAAACTGTAGTTTTATACTTCTTGCTGCATAGCAGGTTGGTAAG
TATTCAGTGAACCCGTTTCCGAAGATAGAACGAGTTTCCTCATAACTACATATAAGACGC
CACCGATGATCAACATTCCAATTCCAGCCATCAAGCTAATTGCCCACGCGGGAACCGCAT
TGCCACGGTAGTAAGTGCGGGTCATAACACGTCTTCCTCTAAGAATTTTTCTTCTGGCTT
CTACCTCTTGTGTAAGTGTACTCAAAATAACTAAAATCACAGCGAAGTAAAACAAAACAG
ATTTCTTCTGTGCCATTTTATTGATTTTTTTTCTTTCACAAATACTCAATAGAGAAACAC
AATCACTAA
(2409 bp)

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