SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoOtmSK_comp14578_c0_seq4
Scaffold_idBomo_Chr25
NCBI non-redundant
(nr)		Single-strand_selective_monofunctional_uracil_DNA_glycosylase_[Operophtera_brumata]
Ontology
GO:0000703 F oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity
GO:0003677 F DNA binding
GO:0004844 F uracil DNA N-glycosylase activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006281 P DNA repair
GO:0006284 P base-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0017065 F single-strand selective uracil DNA N-glycosylase activity
GO:0019104 F DNA N-glycosylase activity
GO:0031981 C nuclear lumen
Transcript
Level		FPKM:0.70 TPM:0.76
ORF EntryO_BomoOtmSK13171_complete:A_BomoOtmSK_comp14578_c0_seq4
Sequence
(Nucleotide)
AACTACTACTACTGAAAATGTTAGTGTTTTTAAAAAATCACAGAATCTGTATTCTGTACA
CTACTTTGTCATATTCATCATCTTAATATTTTTATGAATTAGGTTCCATTTGGTGAAATT
TCTTCAGTCAGAGATTGGCTGGGTATAAAAGGCTCTGTTGGCAAACCTCCACTGGAAATT
AAGTCTAGACCAGTTAATGGATTTGATTGTAAAAGAACTGAAGTAAGTGGGAAACGATTC
TGGGGATTGTTCAAGAATTTATGTGGAGAACCAAACAAATTTTTTGAATCTAGTTTTGTA
TATAATTATTTACCAGAACAATGGATGAAGAATAATGGATGCAATTTGACTCCTGGTGAT
TTCAAGGCCGCAGAAATAGATTCATTATATCACATATGTGATCCAATATTCAAAAAAGTT
CTCGAACTTTATGATGTACACATCATAGTGGCGATTGGAAAATTTTGCGAATTACGCGCA
CAAAAAATTCTGGACAAGTATTCATTTCGAAATAAAATACAGGTAATATACATGCCACAT
CCAAGTCCAAGAGCTGTAAACAATAATAACTGGGACGACAAAGCACTTCACTGTTTAAAA
GAAAACAATTTATTGCACTTTTATCAAGGATTTGCTTGAAATTGTATCGTTAAAAGATTA
AGTCGAATATGGTTGATCATATGAGAAGGTGTCTTGAATTAGCAGCTGAAGCTCTGGCTC
TTAAAGAGGTGCCTGTTGGTTGTGTATTCACAGTTAACGGACAAATTATTGCAGAATCAA
AAAACAGTGTAAACGCCACACACAACCCAACTAGACATGCGGAAATCAACTGCATTGATC
AAATTCTAGAATACTGTAGATTAAACAACATCGATTACAAGCTATATTTCAAGAACGTAA
TTGTGTATGTGACCGTTGAACCGTGCATAATGTGCGCGGCAGCGCTCAACAATCTAAACA
TCCGTGAGGTGGTATATGGTTGCCCCAATGACAGGTTTGGCGGAAATACCGTTTTAGATG
TCAGTAACTTTTATGAACAAAATTATATTTTAAATGGAAACTTGTTGGCAGATGAAGCTA
TGATGTTGCTCAAAGAGTTTTATAAAGGGATAAACCCTAATGCCCCTGAATCAAAAGTGA
AGAAAGATAAGAAAGTTTAATTTAATTAAAATATTGTCGAAGACTTCCTAAAGTGAAGAA
AAGTATAATTTAAACGTAGAGAATTATACAATATTAGTCTATTAATGATTGTCCACATAA
AACTACAGCATGTTTTGTTTAAATTGAAGTTGAGATTACTGTAGTCACCAAACTGATTTT
TTTAGTGTATATGATCTGATTTTTTTAATGTACATGCACAATACAAGTAATTACTGTGAG
TTCACTATTTATCAAAAGTATTAAAAAGGCTCATTTGATTTTTGTAAGATAAATCCTTAT
CATGTTGATACTGATTATACAAATATAAGTGATATACTGTTGGTACTATGTTTAAATCCC
CATTATCAATTTATATACATAAACCACTGACAGCTTACCATAAGCATTACTTTAAGTATG
TATAATTAAGATAGGAAGTTTTCTGAGCTCACACAGATAGGCACCATTCTAACTGTTCCT
GTCATTAGTCCATTCCAGGTAAATGATGGATAGATCCTCAGTCGAATGGCTCGGTAATGC
AGTAGTTAGCCTATGGTAGCAGCCTAACAGGGTAAAGCTCCGATCAACAATTGTAACTAG
ATAA
(1744 bp)

- SilkBase 1999-2023 -