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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoOtmSK_comp14550_c0_seq1
Scaffold_idBomo_Chr10
NCBI non-redundant
(nr)		chromodomain-helicase-DNA-binding_protein_Mi-2_homolog_[Bombyx_mori]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003682 F chromatin binding
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007283 P spermatogenesis
GO:0007517 P muscle organ development
GO:0008026 F helicase activity
GO:0008270 F zinc ion binding
GO:0016581 C NuRD complex
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0016887 F ATP hydrolysis activity
GO:0031491 F nucleosome binding
GO:0032508 P DNA duplex unwinding
GO:0035327 C euchromatin
GO:0042766 P nucleosome mobilization
GO:0043044 P chromatin remodeling
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048813 P dendrite morphogenesis
GO:0051276 P chromosome organization
GO:0051312 P chromosome decondensation
GO:0070615 F ATP-dependent chromatin remodeler activity
GO:0071923 P negative regulation of cohesin loading
Transcript
Level		FPKM:8.53 TPM:9.20
ORF EntryO_BomoOtmSK13066_complete:A_BomoOtmSK_comp14550_c0_seq1
Sequence
(Nucleotide)
GAGATAGTGAGTGTTGCTGGCTCGTCGAGAAGTGACGGCGGCATCAATTTCTGAATTAAT
TACCATTTGTCGCAAAAACTGCGCGTCCTTTATCTTTTCTAGCCAAAAATCTATCATCTT
ATTCCAAGTTGTGTTTGATAGTAATCTAAATGGCATCAGATGAGGAAGTGGACGGCTCTT
TTGCAGGTGATGAGGAAGTAGAGGAAGGTGAGGGTCAAAATGACAATTCCGGAGATAGTG
ACGAGGCTCCACCAAAGGAAGATGAAGATTATTCCCCTGAAGATGGTAGAAAAAAGAAAA
AGGGAAAGAAAAGGAAAGCCAGAGGAGAAGAAAAAAAGGGAAGAAAGAAAAAGAAGAAGC
GAAAGAATGAAAGTGAAGATGATGATGATTTTGGCCTCGAGATGGAAGCAGAAGGTGACA
GTGATTATGCACTGAGCGCTGTCTCTTCAAGCAAGAAATCCCGTAAAGGTCGAAGTAGCA
AACACAACACACCATCCACAACTACAGCATCAGACTCTGGCTCTGGTATGCCAACAGTCG
AAGAGGTGTGCTCCTCGTTCGGCCTTACCGATGTTGACATACAATATGCGGATGCGGACT
ACGAAAACTTGACTACATACAAACTGTTTCAACAACATGTTCGTCCAATGCTCGTTAAAG
AGAATCCAAAGGTGCCAGTATCAAAGTTAATGATGCTAGTAGCTGCAAAATGGCGGATGT
TCTGTGAAACGAATCCACACTTAAGCACTAGTGTACCACAAAGTATGGGCTCTGAAGAGA
ATACAAATACTTCAGCTACTTCTGACTATGTCTCTAAGAGACCCGGACGCACACCCAAAG
AAGCAAAGACTGATGAGACAATAGAGGAGCCCGAAGAAGAAGAGGAGGAAGAAGCAAGTG
ACGAAGGCGCCACTGTGCCGCGGAAACGTGGACGCAAGCCCAAGAACGCGACCGGCGCCG
TCACGCCGCGAGGCAAGCCCGGCAGGAAGCCTAAAGTACCTACACTGAAGATCAAGTTCA
GCAAGAGAAAACGAACCAGCAGCGAGGAGGAACAAGAAGGCAGCGCTGTAAATTCAGATT
CAGACGCCGAGTTCGAGCAGATGTTGGCTGAAGCCGAGGAAACAAAGCCTCCTGTTGCAG
CTGCAGCTGACGAAGCCGCGCCACCTAAAGAAGAAGATCCTACAGCGGCGCTACCTAAAA
AGAAGGCAAAGACAAAGATCGGAAACAAATCTAAAAAGAAAAGGAAGTTGAAGACGACCA
GCAAGTTTCCTGATGGTGCTGAGGGGGAGCACGAACATCAGGACTATTGTGAGGTGTGTC
AGCAAGGCGGCGAGATAATTCTGTGTGACACATGTCCACGGGCCTACCACCTCGTGTGCC
TCGACCCCGAGCTCGAGGAGACGCCGGAGGGCCGCTGGTCGTGTCCGCACTGCGAGGCCG
AGCCCGCACCCGACAATGACGACGACGATGAACATCAGGAGTTCTGCAGAATTTGTAAGG
ACGGCGGCGAGTTATTGTGCTGCGATTCTTGTCCTTCAGCGTATCATCGGTTCTGCTTGA
ATCCGCCGCTTGAAGAAATTCCCGACGGCGAGTGGAAATGTCCCAGATGCAGTTGTCCAC
CATTGGATGGAAAAGTGGCCAAAATTTTAACTTGGCGTTGGAAGGAACAGTCAAGCAAGT
CCAAGGCTCCGCGTTCAAGAGAATTTTTTGTGAAGTGGCATGAACGATCTTATTGGCACT
GCAGCTGGATATCTGAACTACAGCTCGACGTGTTCCATCCACTAATGTATCGTTACTACA
TGCGTAAGTCGGATCCCGAAGAACCGCCTAAACTTGAAGAGCCCCTCGATGAACGAGATA
GTAGGTACAAACGACTCAAAGATAAACAACAGGATACGGAATCTAACAACGAGAAATTAC
TCGAAGAGAAGTATTATAGATATGGCGTCAAACCTGAATGGCTTGTAGTACACCGTGTGA
TTAACCATCGCACATCAAGAGACGGCACTACATACTTTTTAGTCAAATGGAGAGATCTCT
CATACGATCAGGCCACGTGGGAATCTGAGCATGAAGACATTGCCGGACTCAAGCAAGCCA
TGGACTATTATCAAGACATGCGAGCGTTCATAACGTCAGAGGGTAAGACTAAAGGCTTCA
AAGGTAAGAAACCAGGTCGCAAAAGTAAGAACAAAGACCTCACGGACGAAGACGACAGCA
GCGCCGGCCTACAAATGCGCCCCAAGAAATACAATCCGCCGCCTGATCGTCCTACCAGTA
ATCTCAATAAGAAGTACGAGGACCAACCACAGTTTGTGTACGAAACCGGCATGCAGCTGC
ATCCTTACCAGCTAGAGGGTCTCAACTGGCTTCGGTATTCCTGGGGACAAGGCATCGACA
CAATACTGGCTGACGAGATGGGTCTCGGTAAAACCATCCAAACCGTTACATTCCTATACT
CTCTATTCAAGGAAGGCCATTCTAAAGGACCTTTCTTGGTATCCGTGCCACTATCCACAA
TCATTAATTGGGAGAGGGAATTCGAGCTATGGGCACCGGACTTGTACTGTATAACATATG
TAGGTGACAAAGATTCGAGGGCTGTGATCCGAGAGAATGAACTAACATTTGATGACGGTG
CTAACAGAGGTGGCAGACCTTCTAAAATCAAGTCACAAGTGAAATTTAACGTTTTACTCA
CTTCCTATGAATTGATCTCAATTGACTCTACGTGTTTAGGATCTATAGATTGGGCAGTTC
TCGTTGTAGACGAAGCCCACAGACTGAAGAGTAATCAGTCGAAATTTTTCAGGCTTTTGG
CCGGTTATCACATCAATTATAAATTGCTTCTTACGGGTACACCACTACAGAATAACTTGG
AAGAGTTGTTCCATCTTCTCAATTTCTTAAATAAAGACAAGTTCAATGATCTCGCAGCAT
TCCAGAATGAGTTCGCTGACGTTTCGAAAGAAGAACAGGTGAAGAGGCTCCACGAAATGC
TAGGGCCTCACATGTTGCGACGTTTGAAAGCTGACGTACTGAAAAACATGCCTACTAAGT
CAGAGTTCATTGTCCGTGTAGAATTATCGCCCATGCAAAAGAAATATTATAAATACATTC
TAACTAGGAATTATGAAGCTTTGAACCCCAAGAGTGGAGGTCAAACTGTTTCACTACTTA
ACGTCATGATGGACCTGAAGAAATGTTGTAATCATCCTTATCTATTCCCAGTCGCAGCGG
AGGAAGCTCCGTTAGGTCCGCACGGAAATTATGACACGCAAGCTTTGATCAAAGCTTCTG
GAAAACTCGTGCTCCTATCTAAAATGTTGAAACAATTGAAAGAGCAGGGTCATAGGGTAC
TGATTTTCTCACAGATGACGAAAATGTTGGATATACTTGAGGACTTCTTGGAGGGTGAGG
GATATAAGTATGAAAGAATTGACGGTGGTATCACGGGAACGATCCGTCAAGAAGCCATAG
ATAGGTTTAATGCCCCGGGAGCCCAACAGTTTGTGTTCCTCTTGTCGACAAGAGCGGGAG
GTCTGGGCATCAATTTGGCGACCGCCGACACTGTTATCATTTATGATTCCGATTGGAATC
CTCACAATGACATTCAAGCTTTCTCTCGAGCGCATCGTATTGGCCAAGCCAACAAAGTTA
TGATTTATCGTTTTGTAACACGTAACAGCGTCGAAGAAAGAGTCACCCAAGTTGCTAAAC
GAAAAATGATGTTAACGCATTTAGTGGTGCGACCGGGCATGGGCGGAAAGGGAGCTAACT
TCACTAAGCAAGAGTTGGATGATATTCTTCGATTCGGTACTGAAGAGCTGTTCAAAGAAG
AGGAAGGCAAAGAGGAGGCTATTCATTATGACGATAGAGCTGTGGGTGAATTACTCGATC
GGTCTAAGGAAGGAATAGAACAGAAAGAATCTTGGGCTAATGAATATCTTAGCTCTTTCA
AAGTTGCTAGTTATTCCACTAAGGAAGGCGATGGTGAAGAGGAAGTCGATACAGAAATTA
TAAAACAGGAAGCAGAGAATACTGATCCTGCGTACTGGATCAAACTTCTCAGGCATCACT
ACGAACAACATCAAGAAGATCAAGCGCGGACGCTTGGGAAAGGCAAACGTGTACGTAAAC
AAGTTAACTACAACGATGGAAGTGTTGCGCAGACAGAAAACAGAGAGGATTCTACTTGGC
AAGAGAATGGCTCGGACTATAATTCCGATTTCTCTCAAGGTAGCGAGGATGACAAAGAAG
ACGACGATTTTGATGAAAAGAATGATAATGGAGATCTGCTCAGTCGCCGGAGTAAGCGTC
GCCTCGAAAAGCGAGAGGAACGCGACCGACCGCTGCCTCCATTACTGGCCAGAGTCGGCG
GCAACATGGAAGTTCTCGGCTTCAACGCCAGGCAGAGGAAGTCATTCCTCAATGCTATCA
TGCGGTACGGGATGCCGCCGCAGGACGCTTTCAACTCGCAGTGGTTAGTGAGAGATCTGC
GCGGGAAGTCTGAGCGCAACTTCAAGGCCTACGTGTCCTTGTTCATGCGCCATCTCTGCG
AACCGGGCGCCGACAACGCGGAAACATTTGCGGACGGCGTTCCGAGGGAAGGATTATCCC
GTCAGCACGTTTTGACACGAATCGGGGTAATGAGTTTGATCAGGAAAAAGGTTCAGGAAT
TCGAACACATCAACGGGTACTACAGCATGCCGGAACTGGTGAGAAAACCAGTTGAGCCGG
TGAAAGTGTCTGGGGCGAGTGAGAGTGCCGCCCCCAGTCCCGCGCCCTCCACCGCCACAC
CCATCACCTCCGCAGCACCCTCGCCCGCACCCACCTTGCTGCCTCACGGACAGGCAGCCA
CGCCCGCCACGCCCTCTGGCTCTGACAAGGACGATAAAGAGGAAACTAAAGATGACAAAT
TAGAAGTTAAAGATAAACTCAAAGCAGAGCCGATGGATACAGCCGATGTCAAGGAGGATA
GTGCGGAAGAAAAGGAATCACAAAAAGAAGACGAAAAAGAGGCCGAAAGGCGTATGTCCG
TCGACGAGGAGCCTCCAAAAGATGATGATAAAACTGAAGAAAAGAAAGAAGGCAAAGAGT
CACCTAAAGTTAAAGACGAATTGAAGGAAGAGACCGACAAGAAAGAGGATGTAAGAAGTG
AAAAGGCGGCATCTGACGTCTCTGAGAAACCAAAAGAGGAGAAAAAGGAGGACGACGACG
ATGACGTTGTTCTGGTTAAAGAAGAGGAAGATCTCAAAGTAGAACGTCGCAAGTTCATGT
TTAATATCGCCGACGGAGGCTTTACCGAACTCCATACTCTGTGGTTGAATGAAGAGCGAG
CGGCCGCGCCCGGCAGGGAATACGAAATCTGGCACCGAAGACACGACTACTGGCTGTTGG
CCGGAATCGTCACGCACGGATACGGTCGCTGGCAGGACATACAAAACGACCTGCGATTCG
CGATCATTAACGAGCCATTCAAGATGGACGTCGGCAAAGGAAACTTCCTCGAGATTAAGA
ATAAGTTTTTGGCTCGTCGTTTCAAGCTTTTAGAACAAGCGTTAGTGATCGAGGAGCAGC
TCCGTAGAGCGGCATACTTGAACCTCACACAAGATCCGAACCATCCCGCTATGTCATTGA
ACGCGCGGTTCGCTGAAGTCGAGTGTCTTGCCGAGTCCCACCAGCATCTCAGCAAGGAGT
CCCTCGCTGGGAACAAACCAGCCAACGCGGTGCTGCACAAGGTGCTGAACCAGTTGGAGG
AGCTGCTGTCGGACATGAAGTCGGACGTGTCGCGGCTGCCGGCCACGCTGGCGCGCATCC
CGCCCGTCGCGCAGCGCCTGCAGATGTCGGAGCGGTCCATCCTGTCGCGCCTCGCAGCCA
CCGCTGGCAACCCCGTGCCCGCTGCCCAAATGCCGCAGTTCCCGACCGGCTTCCAGCCCG
GCGGCACGCTCCCCGGGTTCGCGGCGTCGGCTGCGACGGCGGCTAATTTCTCCAACTTCC
GACCGCAGTACTCCGTGCCCGGACAGCCTACATCATCCTCTAACTCGAATAAATCATAAA
CTCCGTAATTTAAACAACTATATTCGATTTGACGTAACCCGCAGCGAGCGGATATGTCGC
CGCGTAGGTGAATTAGATGTAAGCTTTTTTGAAGATTCCTGTTTCCACATCGGCTCCGAA
GTCATAATTATATTTGTGATTAGTTCAGATAGATTACATGACGTCATAGCGAAAATAACT
CATAATATTATTTATTTCATCCTGATCTGTATGAATCTTTTCTATCGTGTAAGTGAATTG
TGGACTTATGAAATCTTTATTTTTAATTTACCAAAAATTGAAAACTGAATAAAACTTACA
GTTAAGG
(6367 bp)

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