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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoOtmSK_comp14396_c0_seq1
Scaffold_idBomo_Chr8
NCBI non-redundant
(nr)		transcription_elongation_factor_SPT6_[Bombyx_mori]
Ontology
GO:0000176 C nuclear exosome (RNase complex)
GO:0002805 P regulation of antimicrobial peptide biosynthetic process
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0005703 C polytene chromosome puff
GO:0005705 C polytene chromosome interband
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0008023 C transcription elongation factor complex
GO:0030707 P ovarian follicle cell development
GO:0032784 P regulation of DNA-templated transcription, elongation
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035101 C FACT complex
GO:0035327 C euchromatin
GO:0035363 C histone locus body
Transcript
Level		FPKM:10.86 TPM:11.71
ORF EntryO_BomoOtmSK12674_complete:A_BomoOtmSK_comp14396_c0_seq1
Sequence
(Nucleotide)
GTGCGGGCTGCGGCGGCGCGCTGTGCCGGCGTGCCGGATGGCGGCGGCTCCCGGAAATGT
TCTTTGAACCATTTAAGCAATCCCGAAAGAGAGTCGAACATCCGCTGCCGGAACTTATAC
CCGTCCGGCGACACGGACACGTACTCGTGCGTACACCGCGCCCGCGGCAAATATGACAGT
AGAAATCTCCCGGGATAGTTCTTCGAGGCCGAGATAACGTAATGAATTTTGTTAGGGTTT
TTGGCTTTCTCCTCCTTGAGTATTTCTTCAGCTTTATCCCTGATCCCGCCGAGAGGCTTA
TAGTATTTATACGCAATGAGATCTCGGGCGTGCCCCGCCATCGGTGTCACGTGACGAGCT
ATTATTTCATCCAAATCCTCAAATTCGGATCCCTGTATCCAAAGACTTCGACCTAATGAG
AAAGCATTTTCTTTGCCTTCCTCCCTTACGTCGATGTGTTGATAAATTCCGTCAGTCACT
TTCCATGTTACGGTCAAATGGTCAGAACCCTTACTACTAGGCCTCACGATGACCTCTCCC
TGTGCCATTTTGTCCATAAGCTTTTCAGCCTCCGCAAACGAAATGTTGTGGAATGCCGGA
TGTACTATCACGCGTTTTACGTACTGCATGCGATCCTTGTTCTGTTTTGCATCTTTTTCT
TTGCGTATATCTTTGTCTTCCGTTTCTTGGTCGTAGTAAGGGTCCTTTGGAGGTTTCCAT
TCATTATTCTTATCCAACAAGTCCGAAGACTTTGAAGTGCAGTCCACGGAGAAGCGTTCG
ACGTCGATCTTTATGACCCGGCAGTGCACGGTCTGCCCGATGCGGACCCTCTCGGTCGGA
TCCGTGACGTGGCGGTCCGACAGGTTCTTGATGTGTATGTAACCGGACAGGCCGTTGTCC
AGCCGGATCCGGACGCCGGTCGCCTGGCCCGGGCACGCACCCGCGTCGAAATGGCTCCAT
ACTTCAGACAGCTCAGGAAAATCATTCTTGAAGCAAAACGGACACTGCCACAGCCCCGTC
TCGTCGTTTCTAACGGGCGTCGCCTGGTCCAGCATCTCCCGCTGCGGTTTCCTGTGCGTG
ATGCCGATCACAGACGCTAAGACCATTTTCCCCACGTAAAACGTATCCGGTGACTCTTTT
GTTAAAATGTCGAACAGTTCCTCGGGCGTTGGCGAACGATACGACACCCTAAGATCCTTG
TACCTAGAGTTCAATTCCGCTCGAATATCGTACAGGGTTATGCTCTTATTACCGAATCCT
TGACGTTCCAGCTCTTCAGCGAACGCGTCCAAGTCCAGGTCTTTAAGTCTCTCTGGAGCC
TCGAGGATTTCCTCCAGAGCGCCCGCCGGGTTGGCGTCCTCGTCTTCGTACTCCAAAGCG
TCGACCGCCATCTTGCGGGCCCACTCGTACGTCTCCGGGTGCACTCTGGACCCGTCCAGC
ACTTCAATGTACGCCTCGGTACTGTCGCCGAGGCTGTTCGTGTCTATCCTGATAAAGCCT
GAACAGTTTATGAAGACTTTTGGGCCCATGTGACAGACCGTGACCAACTGCGTTCTGTTC
TCCAGCTTCTGGTTGGTCTGCTTGAAGAGTTTTATCAGGGCCTGCGCCTTCCTCGGGCCG
AGGCCGCACACGTACTGCAGCAGCTCGGTCCCTCGGCCCGTCAGCACCGCCTCGTTGACG
TCGACGCCCACTTCGTTGACCCTGTTCACGAATTCCAGTTCTATACCCTCGAGCAGATCG
TCCTTGGCGATTTGATCCTGCAGCGGATGGTATCGGAGGCACAGTATTTCCTCGTCCGGG
CCGCACAGCTGCGATATTTCCATCAGCGGATCCTGCAGCAGACGACCTTGACAAATGGCT
TGACGCAGGATGTCTGGGTATTCACGGAAATCGTTCCTTCCTCGTATGCTGTTGCTGTAA
ATCTTGCTGAAGTGGTTGTCGGCTATCTCGATAGGTATCCTCGGGAACTGCTCGTCCTCC
ACCAGCTGCTGAACGCAGTCCGAGATGTCGGCTTTAACATTGAGCGCTTCCCGGGACTCG
CCGCCGATGACGATCACGTGCGGCTTCTTGCGACAAATGAACCTCCTGAGAGCGGTCATA
TCGGCGTCCTTGTTGCGGCGCTCAAGCGCGTCCCAGGCGTTCCGCCGGTACAGCAGGTGC
GGCAGCCGCAGATGGTCGGCCACCTCGCCGCCCGGGCCCACGATGCACGCGAACGCACTG
TGCGCGCGGTCCGGCACGTACGCCACCGACATTACTCGCACACCATTGGAGGCGTCCCAC
TCATCATCATCATCAGATATTCTAGACTCGTACGGAGCTACTTTCAACCAGTCGTACAGT
CTCCGACGACAACACTTGAGAACATAATCTTTAGATTCCTGTAAGAGCACAGCGTGCAGT
TCTCTTCTCAACTCGGGCATGACGATCTTGGTCAAGGCAATGGTGACCGCCTCTGAGCGA
AGTTCATTCCAAGCTTGTACTGTGGCAGCAAATTCGTCCTTTTGATAGAGCTGTTTCAAT
TCCTCTAAGTAACTAGGGCTGGTGTTGCCCTCGATCTGCTCACTGATGGTGACCACTAAC
AGTTTATCTTCGGCTGCCATTGTTAATTTAAGAAACTGTTCACCGGTAATGTCTCGAACT
GGTTTTTTCTTTAAATATTTGAGGCTGTAGCAGGCGTGGTTCTCGTCGATCTCCTTGATG
CCCTTGGCGGTCGGCTTGACGGAGACGGTGGCCCGCTCCCGCAGCGCGTCCCGCAGCGTG
GCCCGCAGCAGCGGCTCCCGCGCGAGCTGCACGCCGCACATGTACACCGCGCGCCGCACC
ACCTCCGCCGCCGACCCGATGTTACCCACGTATTCGGCGGCGGCTTCGAGCGGCGCCACG
GGCTGCTGCTCCACCTCGTGCCGCTGGTAGTTGTCGCGAACGTTCTCGGCAAACTGTTCC
GGAGTTAAACCAAACTTCTTAACGAGGGGCTCGATACCAGCCTTCCTGCACAGTTCATAA
GGTCCCGATTTGGCTGCGTATTTGATGTCCGTTAGGTCTTCTTCGTCAAGTTCTATAGCT
TCAATGGCTGCTGCTGCTTCCTCTGCATCTTCCCCGTTCTTTTCGGCCTCTTCCCGAGCA
AGTTTTTTTCGTTCCTCAAGTTCCTTCTTCCGTTCCTTGATGCGTTGTACTCTCTGCATT
TCGGGAAGTTCACAGGAATAGTACAACAGGAAATGAGCGTGTACGTCCCGCAGCTCTTCA
GGAGTTTGTACAGATTTCAATCTTTCTATATCTTCATCTTTGACGAGCCTCATGTTTTCA
GGTATGGGAGCATCGGGATTCTCCATTACTTTGTCCAATTGATAATCACGCATGTTCTCG
AATAGCTTCAGTAAATTCTCTTTCCGTTGTTTCAGCTGACACCACTTAGCATCATATTTA
TAAACTTTCCATAGATCGTTGATACTGAGTTCTGGCTCCACGTATTCCTTACGGTAGAAC
GCTATGAAAGGCACTTCTAAGGTCTGATTTCGCATGAAGTCAAGCGCTTGACGAATCTTC
GTTATTGTACTTGAACCTCGTCTAGTTCTCTCCCTGGCGTCCTGTGCATCAGCTTTGGAA
ACTGAAGGCTTCAAGAAAGCCTGCTTGTAAATCCATTCTGCCTCTTCTTCCAATTCATTA
CTGCCTTCCTCCACTGGAGTTATAGGCACTTCACGAGTTTGCATACGTTCAGGAACATCA
GTTTTACGTATCTCATTATCCAAATCAGTAAAGTGACTTCTCTTCAATTCACTGGGTTCG
TATATTTCGAAGATCGACTTCTTGCTTGGCCTTTTAGCTTTACCCTTCTTTGTCCTACGT
CTTTCACCTTCCTCTTCATCATCTTCAATATATTCATCCAGATCCTCTTCGTCTTCATCC
TCGTAATCTTCTTCGCCATATTTTTCAAATTCATCATAGTCAAAATCTACACCGAATATA
TCTTGACCTTCTTGCAGTGACGCATCAGTAAATATAGGTTTGCGTTTCTTTTTGCGTTCA
GCTATTGGTCTACCATCATCATCAACAATAAAATCATCAGCATCTGATTCCAACTCTTCA
TTGTCATCATCATATTCTACATCACCACGTGGGGCAGCTGAATCGGAACGATTCTCATCT
TCCTCATCAGAACCACCAACAAACAATTTCTCTGCAATAACTTCTCTTTCCAGGTCAGGA
TCATCTGCACCTTCATTGTCACTGTCGTCATCTTCTAGTCGACGTAGACGTTTAAATTTG
TTTCTTGCAACTTTTACACCAAGATTTTCTTCAATGAGATCATAATCTTCATCTTCAAGC
CGATCATCCAATTCATCATCACTTTTTTTTCTTTTCTTTGGTCCTACACTAGCATCAGAG
TCCTCTCCATCACTTCCTGATTCTTCTATTGGTGCGTCATCTATCAAATCTTTAAGTTCT
TCTCGGAGACGTTCCTCATCATCTTCTTCTTCTTCGTCTTCGTCGTCACTTTGAACTGCT
TTCCGTTTATGTTTTTTGCGTTCTGCCGGCTGCTCTTCTGCCTCAGAATCCAACTCGCTC
TCCTCTGCTTCAGATTCCAGAAAGTCTGACATGACTAAACTAAACTACTATTCTACTATA
ATCTTAATCTAAATAATACGCTAAGCTTTGTTAATTTTTATTTCTAAAAAATAAGAAAAA
TAAAAAGGCTATGTATCGTTTACATGAAATTATGACAGAAAAAAAA
(4726 bp)

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