SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoOtmSK_comp14296_c0_seq8
Scaffold_idBomo_Chr13
NCBI non-redundant
(nr)		R2D2_protein_isoform_X1_[Bombyx_mori]
Ontology
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006468 P protein phosphorylation
GO:0006955 P immune response
GO:0008047 F enzyme activator activity
GO:0008285 P negative regulation of cell population proliferation
GO:0009615 P response to virus
GO:0016020 C membrane
GO:0019899 F enzyme binding
GO:0030422 P production of siRNA involved in RNA interference
GO:0031047 P gene silencing by RNA
GO:0031054 P pre-miRNA processing
GO:0034599 P cellular response to oxidative stress
GO:0035196 P production of miRNAs involved in gene silencing by miRNA
GO:0042473 P outer ear morphogenesis
GO:0042474 P middle ear morphogenesis
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0043085 P positive regulation of catalytic activity
GO:0044822 F RNA binding
GO:0048471 C perinuclear region of cytoplasm
GO:0048705 P skeletal system morphogenesis
GO:2001244 P positive regulation of intrinsic apoptotic signaling pathway
Transcript
Level		FPKM:0.29 TPM:0.31
ORF EntryO_BomoOtmSK12358_5prime_partial:A_BomoOtmSK_comp14296_c0_seq8
Sequence
(Nucleotide)
GGTACCTACCTAAATGTAGGTACTATTAGATTTAAAAATTTAATTATTGTTAATGATTTT
GCTTTTACTGTTCCAGTTTTAAGCTTTAAAAATCTAACAACAAGATGAAAACTCCCATAA
CAGTACTGCAAGAAATGATGATGAAACTTGGACAGATTCCAGAGTATGAATGTGTTGCTC
AGTCAGGGCCCCAACACCAGGCCACATTTGAGTTCCGCTGTAAGGCTTTAGGTGAGTCTG
TCTCTGCTTCTGCACGATCAAAGAGGGAAGCAAAGCAGGAAGCAGCCCGTGCCATGCTGT
TGTGTCTTTCTACAATAGGTCACCGTGTACCCCCACCATTTGCTACTGAATTTACACAAC
CCTCTCATAGTAACCAATCGGCTGGCGAGTGCTCCGAGGGCAAAGCGCCCACAGTGGACA
GTCGCAGCTATGTGGCGCTGCTGAAGGAGCTGTGCGAGGAGTACAAGCTGCCGGGCGTGG
AGTACGCGCTGGTGGCGGACACGGGGCCCGCGCACATGCGCCTGTTCAGCGTGCGCGCCA
GCATCGGCCTGCACTCGCGCGACGCCAGCGGCACCACCAAGCGACAGGCGCGACAAAAAG
CCGCAGCCGACCTCTACTTGTTCCTGCGTGAAAACCTCTCGCGTCTCACTCATGATTTCG
TTGAGGAACAAGCGCTGGTGCGAGCCCACGAGCGCGCCATGGAGCGGTTGGTGGAGACCA
CTCCCGCGCCCTGGAAGCCGGACCTCGGCCAGCGCGTCTCCGAGTACCATTACGGCCTCA
TCTCGCACACGGGTGAGTGCACCGCGCGCTCCAGGCGACGCCTCCCTGTAGTGCTTGATC
AGTGCTTGAGACGCGCGATGGTTGACACAGATCCCGAAAAACGCATGGCGGCTCGAGCCG
TGCTATCCGAGACGGACGACATAGAGGAGGCGGCTGAGCGCGCGGCCGCGGCGCTGGAGC
TGCAGACGTGCTGGGAGACCCTCGACCCGCTCCACGTGCTGAAGCTAGATGCGGCCCCGG
CTCTAGCCTTCAGCGGACACTCGCGCGCGGACGCGGCCCGGGCGGCTCTGCGGTACCTGC
GCCGAGCCCTGCGCGACGTCTCCCCTCCGCCGCCCGCCGCTCTGTGACCGCGCTGTGACC
GCACTGTGACCGCGCTGTGACCGCACTGTGACCGCGCTGTGACCGCACTGTGACCGCGCT
GTGACCGCACTGTGACCGCGCTGTGACCGCACTGTGACCGCGCTGTGACCGCA
(1253 bp)

- SilkBase 1999-2023 -