SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoOtmSK_comp14296_c0_seq7
Scaffold_idBomo_Chr13
NCBI non-redundant
(nr)		R2D2_protein_isoform_X1_[Bombyx_mori]
Ontology
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006468 P protein phosphorylation
GO:0006955 P immune response
GO:0008047 F enzyme activator activity
GO:0008285 P negative regulation of cell population proliferation
GO:0009615 P response to virus
GO:0016020 C membrane
GO:0019899 F enzyme binding
GO:0030422 P production of siRNA involved in RNA interference
GO:0031047 P gene silencing by RNA
GO:0031054 P pre-miRNA processing
GO:0034599 P cellular response to oxidative stress
GO:0035196 P production of miRNAs involved in gene silencing by miRNA
GO:0042473 P outer ear morphogenesis
GO:0042474 P middle ear morphogenesis
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0043085 P positive regulation of catalytic activity
GO:0044822 F RNA binding
GO:0048471 C perinuclear region of cytoplasm
GO:0048705 P skeletal system morphogenesis
GO:2001244 P positive regulation of intrinsic apoptotic signaling pathway
Transcript
Level		FPKM:1.30 TPM:1.40
ORF EntryO_BomoOtmSK12355_5prime_partial:A_BomoOtmSK_comp14296_c0_seq7
Sequence
(Nucleotide)
GGTACCTACCTAAATGTAGGTACTATTAGATTTAAAAATTTAATTATTGTTAATGATTTT
GTTTTAAGCTTTAAAAATCTAACAACAAGATGAAAACTCCCATAACAGTACTGCAAGAAA
TGATGATGAAACTTGGACAGATTCCAGAGTATGAATGTGTTGCTCAGTCAGGGCCCCAAC
ACCAGGCCACATTTGAGTTCCGCTGTAAGGCTTTAGGTGAGTCTGTCTCTGCTTCTGCAC
GATCAAAGAGGGAAGCAAAGCAGGAAGCAGCCCGTGCCATGCTGTTGTGTCTTTCTACAA
TAGGTCACCGTGTACCCCCACCATTTGCTACTGAATTTACACAACCCTCTCATAGTAACC
AATCGGCTGGCGAGTGCTCCGAGGGCAAAGCGCCCACAGTGGACAGTCGCAGCTATGTGG
CGCTGCTGAAGGAGCTGTGCGAGGAGTACAAGCTGCCGGGCGTGGAGTACGCGCTGGTGG
CGGACACGGGGCCCGCGCACATGCGCCTGTTCAGCGTGCGCGCCAGCATCGGCCTGCACT
CGCGCGACGCCAGCGGCACCACCAAGCGACAGGCGCGACAAAAAGCCGCAGCCGACCTCT
ACTTGTTCCTGCGTGAAAACCTCTCGCGTCTCACTCATGATTTCGTTGAGGAACAAGCGC
TGGTGCGAGCCCACGAGCGCGCCATGGAGCGGTTGGTGGAGACCACTCCCGCGCCCTGGA
AGCCGGACCTCGGCCAGCGCGTCTCCGAGTACCATTACGGCCTCATCTCGCACACGGATC
CCGAAAAACGCATGGCGGCTCGAGCCGTGCTATCCGAGACGGACGACATAGAGGAGGCGG
CTGAGCGCGCGGCCGCGGCGCTGGAGCTGCAGACGTGCTGGGAGACCCTCGACCCGCTCC
ACGTGCTGAAGCTAGATGCGGCCCCGGCTCTAGCCTTCAGCGGACACTCGCGCGCGGACG
CGGCCCGGGCGGCTCTGCGGTACCTGCGCCGAGCCCTGCGCGACGTCTCCCCTCCGCCGC
CCGCCGCTCTGTGACCGCGCTGTGACCGCACTGTGACCGCGCTGTGACCGCACTGTGACC
GCGCTGTGACCGCACTGTGACCGCGCTGTGACCGCACTGTGACCGCGCTGTGACCGCACT
GTGACCGCGCTGTGACCGCA
(1160 bp)

- SilkBase 1999-2023 -