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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoOtmSK_comp14178_c0_seq1
Scaffold_idBomo_Chr23
NCBI non-redundant
(nr)		RNA_polymerase-associated_protein_CTR9_homolog_[Bombyx_mori]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000993 F RNA polymerase II complex binding
GO:0001711 P endodermal cell fate commitment
GO:0001826 P inner cell mass cell differentiation
GO:0001829 P trophectodermal cell differentiation
GO:0001832 P blastocyst growth
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007259 P receptor signaling pathway via JAK-STAT
GO:0010390 P histone monoubiquitination
GO:0016055 P Wnt signaling pathway
GO:0016570 P histone modification
GO:0016593 C Cdc73/Paf1 complex
GO:0016607 C nuclear speck
GO:0019827 P stem cell population maintenance
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0033523 P histone H2B ubiquitination
GO:0035327 C euchromatin
GO:0042169 F SH2 domain binding
GO:0045638 P negative regulation of myeloid cell differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051571 P positive regulation of histone H3-K4 methylation
GO:0070102 P interleukin-6-mediated signaling pathway
GO:0071222 P cellular response to lipopolysaccharide
GO:0080182 P histone H3-K4 trimethylation
GO:1900364 P negative regulation of mRNA polyadenylation
GO:2000653 P regulation of genetic imprinting
GO:2001162 P positive regulation of histone H3-K79 methylation
GO:2001168 P positive regulation of histone H2B ubiquitination
Transcript
Level		FPKM:6.60 TPM:7.12
ORF EntryO_BomoOtmSK12052_5prime_partial:A_BomoOtmSK_comp14178_c0_seq1
Sequence
(Nucleotide)
GATCTGGATCGACTCTTGGATCTGGAGCGACTCTTGGATCTGGATCGACTCTTCGACCTG
GAGGCACTCTTCGACCTCGAACGGCTTTTCGAACGAGATCTGCTCTTTGACCTGGAACGA
GATTTAGACTTGGATCGGCTCTTGGATCTGGAGCGGCTCTTCCCGGAGCCGGACCGCGAG
CGGCTGCGAGACTTGGACTTGGAACGACTCTTCGACTTTGATCTGGATCTGTCGCTATCG
GAAGCCGACATGATTCTCTTCCTTCCCTTGGCGGCGGGCGGACTCCCGCTGCCGCTCTTG
CTGCGACTTCGACTGCGGCTACGCGACTTCCTCGAATTATCCGAGTCGGATTCCGAGGTG
GATATGGTCTCCTTGGAGACGATCTTGGCGCGTTGCTTCGCGCTGAGCTTCTCTTCCGCA
GCTTTCGCTTTGGCGCGTTCCCGACGACCGATGCCCTTTTCACCCCGTTTCCTGCCCTTC
TTCCTAGGCGGGTCGCTGTCGCTGCCGGAGCCGCGCTGCTCCCTGCGCTTCCTCGACTTG
CCTTTCTTCCCTTCGCCGCCTTCGCGTTTACGCTTCTTCTGTTTCGCTTCGCGTTTTTCT
TCAGGCGGACGATCGCTTCCGCTGCCGGGCGAGTCCGATATGTACTCGTCTCTCCTCCTC
CCCCTCCCCCCGCCCCGGGGCTTGCTCTCCGGCATCTCGGTGAACAGCAGCGCGTTCTTC
GTCTTCTCCTTGTACTCCTGTCGCTTCTGGAGCATCTCGACGGTGCTCTTCTGTTGTTGT
TCTTCCCGGATCCGCCGCTCCTCTTCCTGTTGCCTGCGGAAGGCCTCTCGCTGTTCCCGT
TGCTTGTCCCGCAGCGACAGCTCCTCGTGGTGTTGTCTGCGCGCACGTGCGACGTGCCAC
TGCGCCTGCGACAGTAGGTCCGCGCACGTGCGCGC
(935 bp)

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