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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoOtmSK_comp14080_c0_seq1
Scaffold_idBomo_Chr8
NCBI non-redundant
(nr)		PAB-dependent_poly(A)-specific_ribonuclease_subunit_PAN2_isoform_X3_[Bombyx_mori]
Ontology
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000932 C P-body
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0016787 F hydrolase activity
GO:0031251 C PAN complex
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
Transcript
Level		FPKM:2.98 TPM:3.22
ORF EntryO_BomoOtmSK11833_5prime_partial:A_BomoOtmSK_comp14080_c0_seq1
Sequence
(Nucleotide)
GTAGCATAAATATTTTTAATGCTTATCAATTTTCATTTGAATTTTGTATAGACTTATGTC
TGTTAAATTCGTTATACAAAAATGTAGAAAATTGTGAGATTGGTGTATTTGCAGACTACC
CCCTATATTGGCGATCAATTGTGGAGGAGTTACGGTCAGAGAGAAAGCGTATTGGGCTAA
AGGAGTACAAAAGGAAATGTCCGATTCGAAGAGAGGGGGCAGCGGGAAGCCGTGTCGCTA
CGGCTTACATTGCGCACGACCGGGTTGTCATTTCAAACATCCCGATCGGCCGAATACATC
ACAAAGTTCTTCCAAGGGCTCGAGCCAGGAGTCGCACTGCATGCTGCCGCTTCAGCTGCT
CATCCGGCTTCAGTCAGACGGTGACGTCATCATCAACGACAAGATCGAAACTAATTCAGC
GGAGAGTTCGCCGATCAACCGACCGGACACGAGCAGGCACAAAAAGAAGTACGTGACCAC
GCACCTCGAGGAGGAGTACTCGCTCTCGGCCGCCGTCGTCTGCGTCGAGGACAACCCTAA
GAACTTGGTCGCCTACATACACACGGTCCGGGACGGCGAAACTCAATGGTTCATGTACAA
CGATCTATGTATCGTTCCGGTGAGTACGGACGAGGTGATACATTTCGGCGTGTGGTGGAA
AACGCCTTGCGTGCTATTCTACACGGCGACCGGCGGCGGACAGTGCAACGGTGACGTCAG
CTCATAGCCGACGCTCTTGTATGGGCCATACACTACGCGTACCGCAGGCCCATACAGCAT
GGAACAAACTTACTATTGTGTACGTCCGCCAACGCAGTACGACTACGTTTGAAATTTCCT
CATAGATGTAAGTTTAGTGAATATTAAGGTGATTACGCGAACAAACGCTTGTTTGCAGTA
CGTGTGATGGTCGAGTTTGAAATGAATTGGATAATGAAGTCTTATCAACGGGTCGTTCGT
GTTACGCGAAATTAAGTCTTATCGCACTTACGTAAGATTGAAATTGTGTTTCCGAGACAG
CGATTAATTAGGTCTTGCCAGGGATTATTCATTTACCAACTACATACTTTTAGGGAATTT
CGAAACTAATCGAACGAACATTGCGCTAATGCACAGATCTCACTTTTATTTTTGTATAAT
AATTAGTACATGCTCTATGTGACTTTAAAAAAAAACATAAGTTAATAATTTTTTTTGTCG
GTCCAATGAAATAATAATACAGTCAACATTGTTAACGCGCGATTTTTGCTGTACAGTAAT
TTGGAGATTTTAAATCATTAATAATACGTTTCGATTTGTCATAAATAGAGGGCGTACAGT
TTTTTTTTTTTAATTAAAAAAATTTTTTTTTTTTTT
(1356 bp)

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