SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoOtmSK_comp14031_c0_seq1
Scaffold_idBomo_Chr14
NCBI non-redundant
(nr)		host_cell_factor_1_[Bombyx_mori]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000123 C histone acetyltransferase complex
GO:0001205 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005671 C obsolete Ada2/Gcn5/Ada3 transcription activator complex
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007005 P mitochondrion organization
GO:0007049 P cell cycle
GO:0010628 P positive regulation of gene expression
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016568 P chromatin organization
GO:0019046 P release from viral latency
GO:0030424 C axon
GO:0030425 C dendrite
GO:0042802 F identical protein binding
GO:0043025 C neuronal cell body
GO:0043254 P regulation of protein-containing complex assembly
GO:0043981 P histone H4-K5 acetylation
GO:0043982 P histone H4-K8 acetylation
GO:0043984 P histone H4-K16 acetylation
GO:0043995 F histone acetyltransferase activity (H4-K5 specific)
GO:0043996 F histone acetyltransferase activity (H4-K8 specific)
GO:0045787 P positive regulation of cell cycle
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046972 F histone acetyltransferase activity (H4-K16 specific)
GO:0048188 C Set1C/COMPASS complex
GO:0050821 P protein stabilization
GO:0070461 C SAGA-type complex
GO:0070688 C obsolete MLL5-L complex
GO:0071339 C MLL1 complex
GO:0071407 P cellular response to organic cyclic compound
Transcript
Level		FPKM:12.91 TPM:13.92
ORF EntryO_BomoOtmSK11739_complete:A_BomoOtmSK_comp14031_c0_seq1
Sequence
(Nucleotide)
GCAGCTTCGACTAACCTGAATATTTTCTTCAAAGCTTATTTACGACGTTTCTCATTGTCT
ATGTTCTATAGATACGCATCCCGAACAATACATACGGTGTATTGCTTTTAGTAACAAATG
TATAGTGAAAATGAAGGAAAACGCGGTACTTAAGTGGCAAAAAGTGTACAATCCTACCGG
CCCTCAACCGCGACCCCGCCATGGCCATCGCGCGGTCGCCATAAAAGATTTGATGATAGT
TTTCGGCGGCGGAAACGAAGGAATCGTTCACGAACTGCATGTCTTCAATACCACCACTAA
TCAGTGGTTCGTACCAGTCACAAAAGGAGAAGTCCCACCAGGATGCGCTGCCTACGGCTT
CGTGGTAGACGGTACGCGCCTGTTAGTTTTTGGCGGCATGGTAGAGTACGGCAAGTATTC
AAATGATTTGTACGAATTACAAGCCTCTAGGTGGGAATGGAAACGTTTAAAACCACTGCC
ACCAAAGCAGGGTCTTCCACCTTGTCCACGACTCGGTCACAGCTTTACGCTTCTCAATGG
GAAAGTATACCTGTTTGGCGGACTGGCCAATGAAAGCGACGATCCAAAAAATAACATACC
GAGATATCTTAATGATCTATACATTTTAGGACTTTATCCTAATTCATCTATGACTGTTTG
GGATATACCTTTGACCTACGGTCAGTCTCCACCTCCCCGAGAGTCTCACAGTGGGGTAGC
ATATACTGACAAAAACACAGGCAAATCATCTTTAATTATCTATGGAGGCATGAGTGGATC
TCGCCTTGGTGATTTGTGGATACTTGATGTTGACACAATGTCATGGTCTCGACCGGAAGT
TGGAGGACCTCCACCTCTTCCTAGATCACTTCATACAGCTACAGTTATCGGCCACCACAT
GTATGTCTATGGTGGCTGGGTACCGCTGGTCCCTGATGAATCTAAACTTGCTACACATGA
GAAAGAATGGAAGTGCACAAACACCCTTGCCTCATTGAACCTAGAAACAATGACTTGGGA
CAATATAGCACTGGACAAATTTGAGGAATGCGTTCCTCGGGCTCGAGCTGGACACAGTGC
TGTTGCTATTCAAACTAGACTGTACATATGGTCTGGAAGGGATGGATATAGGAAAACTTG
GAACAACCAAATCTGTTGCAAAGACCTTTGGTATCTTGAAGTAGGAGTACCACCACAAGC
GGGACGTGTAGCCCTTGTACGTGCTGGCACCACATCATTGGAACTATGCTGGCCTGCTCT
CAACACAGTTACCACTTATTTATTGCAAGTACAGAAATGTGGCAAAGTGACACCTACACG
TTTCCCGGCTGCCTCTGAACCTGTGGTTGCACCTCCTCCTGCATCTCCTGCTGCCACACA
GACTGATGCTGCTAAAGCTTTTGGTCTATCTTCTCCAGTTTCTTCATCGATCCCCATCAC
ACCATCTGATACAAATGCTCGTGTAGTAGTTACAGTAGCTTCACCTATAGTGACACCAAT
CATCACGACTCCTCAAAAAGTAACACCTGGAACACTCAAACTGTCTGCTCAAGCTGCCAC
CGTAAAAGTCACGCCGGGCACTCCAACTACGAAACAGTCATTCCAGGCGAAAGCAATAGT
CAAATCTCCCGCTAATCCTGCGACGCCTAGCTCCTCTCAACAGATCAAAGTGGCCGCGGT
GACGCCGCAAGGTGTGACAAGAATCGTAAGTGGCGTCTCGACACCAGGAACCGTACGTGT
CTCTACAGCACAGTCTGGTGCACAGATTGTGTTAGGATCGGCCTCTGGAGGCGCCGGTAC
GCCGCGTTACGTACAAGTGAAAACAGGCGGGAGTGGTGCTGTTCCTGTGAAGTTGAGTGC
TGGTAATATGCCTGTCAAACTTGCAGGTAATGCAGTCCCACTAAAGATTGGTACTACTAA
CATTCAAGGAAAATTGACTCCCAGCAGTGTGCAGAAAGTAGGACAAGTCACTGCTGGAAA
TCTACCCTTGAAACTTGGTGCCGGTAATGTCAAGATTGGTACGAGTAATGTTCTTGTAAA
AACAGCAGGCGGAATGCCCTTACAGGGTGGTGTTGCAAACCTACAAACAAAAGTCGCCAC
CGGGGTTCCTGTGAAACTAGGCGCCGGTAACATTCCTGTGATAGCCAGCTCAGGGGGCAC
GATTCAAATAGCAGGTGGAACGCTGGCTGGCCAACAAGTAAAAACACCTGTATATAAGAT
ATTGACAGCAAAATCAGGTGATCAAACAGCAACAGTGGCTACATCAACAGCAACTGGTGC
GACAGTACTGAGGCAAGCAGCTGGCAATGCTGGTATTCCCGTCATCATAAAGAAAACAGG
TGCAGGTGCGCAAGCAAGTAATACACCGCAATTTGTTACCCTTGTGAAGACCTCAACGGG
CATGACTGTAGCAACTATGCCAAAAGTAGCAATGATGAACAGGTCTGGAGCAGCCGTTTC
TCAAGCACAAAACATCGCTCCGGGGGCCACTATTGTAAAGTTAGTATCTAACACTGTTGG
TGGTAACAAAATTATCACTTTACCATCTAATATGTTGCAACTAGGTAAGGCTGGTGTTGG
TGGAAAACAGACCATAGTAATCACCAAATCAGCTAGCCAAGCAGCACAGTCAAATCAACA
ACAGTGAGCTGGCAACAATTTGTCAACTGTACTCAGAGTGCCCTTAGCTGTGAACCGGTG
CGTGTGAGTCATGCAGAGTGTACAGGTTGAGTCTGGAGCGGTGTGTTCACAGTATGTAAA
TTAAATTAAATTCTGAGTGTGCTCCGATTGAGTTTCTATTTTAAATCATAGTTGTTTTGT
ATGTTAAATAGGTCTGTGTAGAAAATGTCCTCATAGAATTCTAAAACAAGAAATATATTA
TTTACAAGCTCCTGAGAAATTTTAATATTTTACCTTTCATTATTTCCAAAGTATATTGAA
CATCTCATGATCTGTCGTGAGTTATTGTTCACTCACATCATAGAAATGTTATAACTAAAC
CTGCTAGTCACAAATGGTTATGTCTGATATTTGTGACCTGGATTTGACAACCTCATGCAA
GTGCCTGGTGTGCAGTTCTTGTTTGTGCTTAGATAATATAATTACCAAGACGGGGCAATT
TATTGTTTAATTCAAAGGAAATGTTTATATGCTTCATTTATATTTTAAGCATGTGTTTGT
TTTATTCCTGTATTAAATATTTTTATACTGTAATAATAATTATTATTATGTGTTGTTTAT
TGTACACATTTAATAGATTTCCATGAGCGTCGCATTTGAACACATTTGAATACACCTAGT
TTTGTTGGGATGTCTTCCTTTATAAAAAGATAATTCATTTGTTTCAAATAAATTTAAATT
TCCTGATTTTTTTTACAATGCTGCTAATAGATTGTTAGAAAATCTAAAAATAACCCGGCT
TTAATGACTACAAAACAGTGATTTCAGTAAATTCATAAAATGGATAAGCTTTGTCATTAA
AACTGGAGTTACTGTTTCTTGTTAATTATAAAATAAATGTAGTAGTTTAACAATACTTAT
TGCACTATTTAAGTTTTTTTTATGACAATATAATACTTTTTGTAGCATTTTGTTTTTTCT
TTCTTAGTTGGTCTACTTTTACACACACCTGAGGCTGTATTCCAGTATTTTTGACCATTG
ATCCGATATAACAAAAATGTTAAAAAAAACTGACATTGATAAAACGTGCCTGCTAAATTA
TGTTTTATACGTTTGAAATATTCATTTAGGCACTTCCAGCGACAATGACAACTTTATTGT
TTTTTATATTATTTTCAATTACATACTACATAAATGTTAAGAAGATTAAATTTAGATTTA
GAAATGCAGGTTAGAATTTTGGCGCCAATTTAAACAACGGATGTTTTCAAAGAGTATCTA
CTTAAAACAATATGCCGGTACAGGCTAGCTATGTAAATTAATGTTATTAGAAGAAAAATA
ATAAATATGGGATACTACTTTGTATTCTTTTTTTGTATATGGTATAAAAATGTCTAAATT
TTATCCTGTATTTCTATTTCGATTTATGTAATATTACTTAAGCGTTTTAGATGTACGTAC
ATAGTTTAATCATTAATTAATAGGTAAGTTAAGTGAGGCATGGAATGTAAATATCATTAA
GTAGATAAATTTAATGTTATAGTTTGTTCATATAATATAATATGTTCATTTGCTTGAAT
(4199 bp)

- SilkBase 1999-2023 -