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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoOtmSK_comp13954_c0_seq1
Scaffold_idBomo_Chr4
NCBI non-redundant
(nr)		RNA_pseudouridylate_synthase_domain-containing_protein_2_isoform_X4_[Bombyx_mori]
Ontology
GO:0001522 P pseudouridine synthesis
GO:0003723 F RNA binding
GO:0005575 C cellular_component
GO:0005739 C mitochondrion
GO:0008150 P biological_process
GO:0009451 P RNA modification
GO:0009982 F pseudouridine synthase activity
GO:0019239 F deaminase activity
GO:0031119 P tRNA pseudouridine synthesis
GO:0044822 F RNA binding
Transcript
Level		FPKM:4.43 TPM:4.77
ORF EntryO_BomoOtmSK11553_complete:A_BomoOtmSK_comp13954_c0_seq1
Sequence
(Nucleotide)
ACTACACTAAGCTACAAGTAAGAAAAATATGTATATGTTTATATAATATAATATATATAT
AATATCATAACAATGTTATGTATGTACTAAATATATTATGAAACTAATTTGAAAGCTCTT
GGAAACTGTCACAGATCATGTTGTCTTTTACGTTTTTAATACTAGAAAGTTTACAGGGTC
GACGTGCCGGCGTCTCGTTAGCAGCTAACGAAGAATAACAAAAAACAACAATATTTTTAT
ATGAAAACTTAATCCTACACACTCAAAACTTAAGAAAGAATAAAATGTCTTTAGATTCTG
CTGCTTGGGCGATCTTATTGTAGTCAAATGACAGAATTAAAAACGATTTAAACTTAGCTT
TTGTAAGCAGACAGCAGTCCAACGTATTTGTATATATATATGTATATTATCCCGTGACAA
TTGGCAATGCCGTGGTTAACGCGTTTGACATTGTCAGAGGTTAAACGAAGTCGTCCTTCG
TCGTGTCTTTTATGTGAATATCGAAACAAAATAAATGCATCTCGTTAAGATTAGTAAACA
TGAAACTAAATTTATTTTATTTTAATTGATTTTTCGGAAGCTAATTATTGTAATTTTTAT
TTTCATGTTTCAAACTCGCGTACATTTGAATTTTGTTGTTTCGAATTTCTTTACATTCTT
TTTTTTGTGCTCCCAACTATATTTTATTACCAAAAATACAAAACCACCTAATCAAGATTA
TCGACAAAAAATCACACAAAAAAAGCAAAGGTCAAATTATAGCATCTAACTTTTTCCAGA
ATTACTTTACGCTTGCTACTTTATTGAATGCGCGGAAAACTTGGGTGTCCATAATTATAC
GCAGAATTTCTTAAATTAATATCTAAATACTTGTGGTGAATCATTTATGTAGCCTAGTTA
TGTCTTTTACATCGACCGACCGTAGGGAGGAAAACGGTAACATACATATGTATTCTTTAT
TTCGATACGAAATTAGATGTACTCGAAGCAAGAATGGGTCTTCTCATTCTGTAATTCTTT
TCAAAAACACGCATCAATTACAATAAAAAATAGAAATAATCAAATCGAGATCATTTTCCT
GCAATACTGCGAATAGTTATGGTATTAAATTCGAATATAATTCAACTAATAACTACATAT
ACGTATTTTAGAAAACCGTAATGTGTTCGTTAATGGCTCTACTTGTTCACGAGAAAATAT
GGCGCTGAAATATCGGAAACTCAATTAAGTTGAATAACGCGGTCACGAGCCGTCCGATAA
AAATGTTAAAAGGGAGAAAATATGTTTTAAATCAATTATCGAATTTCCACTTATCGATAT
ATAAGTAACTGAAACATAAGGACGTGCTCTAATGATTAGGATTAGAAGTTCGGGAGGACA
GTAAAGATATAAAGATATTATACGGTGATTGAAGCAAATTATCATTACTATTACAATAAT
TAATAAGATTTATTGATAGAAATTAGCGAAAATGTCTATTCTTAAAAATCGACCTTTTAT
TGATCGAGAATTTACTTAATTGGGAGACAGTATCGACATAACGATTACATAATAATATGT
ATATAAAGAAGAAAAAATATATTTTCAATTTCAAAATTTATTTTGAAAAAAATATTCAGA
GATAATATGTAAGTAAGGTAATATGTTCGAAATGAGAATTCAGCATTTATAATTGTTTTT
TTTTGTCAATAATGATTTATTTTAAATCGCCCTTTTAAATTATGTTCCGCATATTATCAT
GGGCACCCTAATTTTTCCCAGATTTAGCGTCCTATACAAATTAGTTATTTCGCATTGTTT
TATTTGATTTTTGGTAATAAAATACACGTGTATTAAGCACAGCACATACTAAAACGGTTA
ATATGTATAAATAGAATTTACTTTGACTCTCTGAATAGCTAATCGTGAGAAATCTCAAAA
CCTTTTTACTTTAATTTGACGTGTGATACCAATAATAACCCTGCCTTGGTAGAATGATCG
ATATATTTTTAATAGTATTGACCATTAAAAAAAAACACGCTAAATTTTACCCCTCCGCAT
AATAATTATGTTTCGAAATGAGCTGAGATTTATTCTAAGCCAATAGGAACTGAAATCCAA
TCCAAATATTAGTTTAAGAAGTTGCAACCAAAGTCGAAAATTCCAGATCTGTAGAGCTTC
ATCTCTGTCGCGCACGAGAGATTTTCCGTTGTGCGATAGAGACGACGCTACAAAATCGAA
ATTGTAGATTAGATTACTCTAATACCCGATCTCGAGTCGTAATATATGTATACATAAAAA
AAAAACGAAAGAACAATTTTAACACAATAATGTTTTTCAAACAAAGGCATCAGTGAAGAT
GTGTTTTTTTCTTACACTAAAAACCTCACTTTTCAATTTAACTCAGCGGAGTGCTGAAAT
GACACCGGTGAGTTTAGATTATCGACCTTTTTTTATTTAAACTTCAACACGATCAGATAC
AATGTTTTTAACAAACAAACAAAACATCTTAATTCTTAATTCACCATCAATATCTATATA
TATAAGCTACTACATACGGAAGTCCTATAATTATAATGTTTACAATTTGGTCTTGAAGTT
CATTTGAATGGTCTAGAGATGTGGAGGGGGCGGCGTCGCGGCGCGGGACTATGAGTTCTC
CGGCTCGTCCCAGTCTAGGCTCGCCCACTGCGGCAGCTCTGTCTCGTATTCCCATCCTGG
GCCCTTGTACTTCCAGGCGTGTAGGTACATGACGAGGTCGCGCGGGCGCGGGTCGCGGTA
CCGCACGCGGCACTCGTAGCAGTGCGGGTCGATGACCTCCGCCGCGCCCGCCGCGCTCGT
TGCGGTCTCCGCGCAGCCCGTCTGCGTCGCCACCGTCACCTTGTCTGACTTGGCATCGTT
AGAGTCTTCATTGATAGGGAGCGTCGCGAGGGGGGTGGGAGAGGGTGGCGCGCGAGGTGA
CTCCTCCGCCGGGGCCTCAGCGCCGCTCGACGGACTCGCTAGAGTTGGAGTCATGACGGT
AGAGGCTGTCACTCCGGGCGCTGGCGAATCTAATCTCGGTGAAGACTCCCTGGAAGCGGG
TCCTGTGTCGCAGTCGTCTTCGCCAACTTTATCATCGGGCGCCGGCTTCGAGAACAGCAA
ATCGTCATCAGCAGCATCAACACCGAGCCAGTTCTCGGCGTTGTGGATGGCGATCAGATC
CCGGACTAGTTGCTCGTCAGTTTTGCCGCCGGTGTCGCCGCCCTTACCGCGCAGTGGACC
GAACACAGGGTGGTTGTACAGGGGATCGTTTACTACCGGGTAACCGAGGTACTGCAGGTG
AACTCTGATCTGGTGCATTCTACCGGTCTTCGGGCGACAGAGCACCACGCTAGTGTTGTT
CGCCTGGTTGAAGCCAAGTCGCTTGAACACAGTCGAGCAGTCCTTGCCTTTCGGAGAGAC
CTTGCACACGCCTATTTTGTAGCTGACCACTTCTATCGGCTCTTGACATTCTATTTCCTC
GTCAGGAAATTCTCCGTCGACCCTGCAGACGTATTCCTTCTGGACTTGTCGGTTCCTAAT
CTGGTGCTCCATCTGTCTAGCTTTCTTCGGACTCCTCCCGAACAGAAGAAGTCCTGACGT
GAGCCTGTCCAGTCTGTGGATGGTCCTCAGGTTCTTCAAGTTGTATTCCTTCGCGAGGAT
AAAAACAACGGTATTGTGTCTGTAGCGACCGCACGGATGCACGGGGATAGAGGCCGGTTT
GTTGACAACCACAATGTCCTCGTCGATATGAACGAGGGTGATGGGTTGGCTGGTGACCGG
TACTTCGTGCCTGTGCACTACGTTCGCTAGAAGGTCGTTGTGTTTGAGTCTGTAATCAGG
GTCGACCCTCTCGTAGTTGACCGTGAGGGTACCGGCCCTGATGCACCTTTCGTATTCCGC
TGCAGGGTGCGCCCTGAACTCCCTCGCGAAGACATCCAGGATCTTCTCTCCGACCCATCT
CCCTTTCGTGAAGGTCGTGAACGTGAAATAGTACGGGTAGACTTTTCTAAGACCGTTTTC
CATGTAATATGATGTCTCGTTGTATCTGTCGTCCGTGAAGCCGGGCCTCTTTGCTTTTAA
AGCCTTCGTTTCTAATTTAGCCTTTTTTAAGTCTTTGTTGATTTCGCTGTCATCTGCTTT
CCTCTTCTCGCAAGATAAGATTATGTTCTTGCCGTTGTCTTTTTCTCCCTTTCTGCCTGG
TTGCGCCTGATGTTGTATCTGCGGTGGGGCTATAAGCCGAAGAGGGGGCGGTGCGGGCGG
TAACGCTGCCAAGAGCGGAGGCACCAATGGTACCATGCCGCCCATTGGCAACGCTACCGC
AAACTTCTGCATTCCCATTGTCCATGGCAGGAACCAGCCCCCCCCGGCCTGCATGCCCCC
GCCGGCCCCGTACCACGCCAGCTCGATTACACTTGCATTCAACACGCACACACCGTTATC
CCCGATCACCGAACATCAGAACTTGTATTCACTTTACACTACTCAATTATCGTCCAGAAA
AAATGGAAATCCTCTATTAAAATTCAAAACTCCGCAAAAACACTCTAATATAATCACCAC
AGTCGATTCATTTATCAATAAACGTGACAAATAGCGAACATTTAGTAACAGACGATTATT
AATTAACGCAAGAAAAAAACTATTTGTAAAAATACCACGACGAAAACGTAACGTAAAATT
TTCGCGGGAAACGAACAAAAGAACGCAACGTCTCACCCACGCAAACGCTGGG
(4732 bp)

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