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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoOtmSK_comp13858_c0_seq1
Scaffold_idBomo_Chr13
NCBI non-redundant
(nr)		periodic_tryptophan_protein_2_homolog_[Bombyx_mori]
Ontology
GO:0000028 P ribosomal small subunit assembly
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0030515 F snoRNA binding
GO:0032040 C small-subunit processome
GO:0034388 C Pwp2p-containing subcomplex of 90S preribosome
GO:0044822 F RNA binding
Transcript
Level		FPKM:5.68 TPM:6.13
ORF EntryO_BomoOtmSK11260_5prime_partial:A_BomoOtmSK_comp13858_c0_seq1
Sequence
(Nucleotide)
GACAATAACATATTTTATTCAGAATCAGAGGACGTTGGTCCGTCAGTGTCCATGGGCTCA
ACTTCTTCTCGTTTTAAGACCACATCTCCGACGGTCTTTATGCACCTTATCGTATATTTG
TTGAAATCACATATTTTACTCAACTGCGAGTATTTGACGGTCAGAACTTTCTCTACGGCG
AGCAGCGCGCTCGGCGGGAACTTGTGTCTCCCCGTCGACACGAGCGCCGTGGTCCAGTGC
AGCAGCTGCTCCACGTGCCTGCTGTCCTCGAGGAGGCGCGCTATCGTGCTCAGCAGCCGG
TCGCCGTAGTCTTCGTCTAGACTCGATACCGTTAGGGATATGTCTTTAGTGGGCACAGAT
TCAAGGCACTCCTGTATGAGCGCTTGCTCCGCCAGCTGTAGGGCGCCGGTGAGGGCGGAG
CCCCAGGCGCCGTCTCGGAGGGACTGCCTCACCGCGGCCGGCGTTGACGTCGCCTCCAGT
CGATACGGCCTGAAAGTACCGTCGAGGCCGGCGTTCTGGCTGTACAGCATCAGGCCCTCC
GTGGCGGCCACCGCGAAGCTCTCCCCGGTCGGCGAGAACCGGACGCAGTACACGCGGACC
TCAGGTTTGACGTTCCTATCGGCCATGTCCCCGGTCTTGACGCCCGGCAATCGGATGTTG
ACGTTTCCTCCTTCCAGATCCTCCCTCTCTTCCAGTAGCGCCATATTCCCGAACTCCGTG
AGGTTGCGGCGATTCACAAAGTCATTAACAGCATCCAAAGATCTATTTTCCGTGACGACA
AACTTCTTGATGAGTACGGAATCCTTCACGCTATAAAGACAAACGTTCTTCGAGTTGCCG
CCTCCCAGTATGCAGGTACCGTCAGCAGAATAGCATATTGTTGTGAACGCTTTGGTTTTC
AAGAGTGTCTGCGGCGTGACCAGGTCGGTTTCTGCCCTCCCAGAGCCCAGGTCGGACCTG
CCCTCCACGCTACCCGTCTGCTCGCACGTGCTCGGCTCGAAGAACGTTATGTTGCCGTCC
AGGGTCGACACCGCGATCTCTTCCCCGTCGGGTCTGAAGGCGACTTGCAGCGCGTCAGAG
TTGAGTCGGATCGGCTCGCACTGCACCTCCCGGTCGATGCAGTCCCACAGACGGACCGTC
CCGTCCCAGCTGGCGGAGGCCAGGCGCGTGCTGGTCAGCGTCGGGCTGAACGCGAGACTC
GACACCGGCGCCTCGTGACCACCTAGAACCTCTAGCAACTTCCCGAACTTGATCGACCAA
ACGAATATTTCGAAGACGTCCTGACCGCCGGCCGCACAGAACTCTCCGCTGGAGTCCAGC
GCCACACAGCTGAACTGCACCAGGCTGGGTGACGTCAGCGTACGGAAGTTGCGGTATCTG
GTCAAGTCGTAGCATCGTACAGTGCCATCTAGCGACGACGACACGAAGAACTTCTTGTTG
GCGCTGCACGTGACGCCGCTCACGGTCGCCTTGTGCTCGTGGAAGGTCACGAAGCAGAAG
CCGTTCGTCGTGTTCCAGACCTTCACTTTACCGTCGAAACCCCCGGTCACGACGTGCAGC
CCGTCCGGCGAGTACGCCAGGCACGTCATGTCCAACGAGTGACCCTGCTGCTTCATCACG
TATTGCTCGCTTTGCCACTCCCAGACCAGCAGCTGACCGATGTTGGGACAGGCGAACGCG
ATCCAGTCCCCGGGCGGCGACACGCTGATGCTGCTGATGCGGTGCTCCGATATGCTGAGC
GTGTGGATCAGATTCACGTCCGGCATCTCGTGCAAGAAGAACAGACCGCTCGAGAAACCG
GTCACTAGCAGCTTATTCTCCTTGTGGTACTGAACGGCCGTGAGCTTGACCTTCCGATCG
GCGTTGCGTATCGCATCGCCGATGTAGTGCCTCCCCAGTTTTTTGTACATCAATCTCTTA
TCGTTCTCTTCAGAGTTAACCTTCGAATTGTTCTGTTCTTGTTCCGCGTCTCTGTCGCTG
TCATATTCCTTTTCTTTCTCAATATCATCCTTTGCGTCAAATTCTTCCTCTAGATTACCC
TCGTTCTGCAGTCTCACTCGTTTCTTGCGCGACGTGTCATCCTGCTTCACTGCAAGCTCA
TCGGCATCTATACTGGCCTCCCACAAGCACAGCTGACCGTTCCTACTGACCGTTATCAGA
TCTAAGCTTTTCCTCTCGAAGAAGACACCGATAATTTTATCTGTGTGTCCGCTGAGCGAA
TACATAGTGATGTTCTCTAAATATTCGACGGTGTGAATCTTCGTTGTCGTGTCTTTCGAT
CCGACCGCCAGGAGTCTCGAGCAGGACGACCAGTCCAGACACGTCACTTCGTCTAGGGCT
TTCTTGAAGACACGTTTCATGATGAAGGGCCGGTATTCGCCGGTGAAATGTACCGGTGCT
GTCATCACGAATACTGTATTATCGCAGCACACGGCAAAGTATTTTCCATCAGGACTAAAC
TTAACCGCATTCACTTGCTGCTTGAACTTATACTTGTGTAACACCACAGAAGTTGTAAGA
CTTATAATTTGTGCTTCACCCTTTTCCGTAACAGCCAACAATGTCATTCCATTTGGTGCA
ATATCAACAGCTGTATAATTGTAGTGACTTTCAAATGATAGAGTGTTACTTTTATTCTGT
TTCAAATTATATATGGTTATTCTGTTACCAACTGGACTGATAACGCAATTTCCATCTTTA
CTGAAGAGCACATCACCTTTACGGTAAACTGTTCCGAGTAAATTTTGAAACTTATAATTA
AACTTCATGGTGACTAAAGTGCTTCGTAACTATGTAATAATTCTATTGAATTTGCTCTTA
ATATTTGAAACAACTGCATAAAGAATCACACCATATTCATCGTGAAATTGTGTTCGGTTC
ATAAATAAACTTAGAACCACAATGTGAATCTATT
(2914 bp)

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