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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoOtmSK_comp13720_c0_seq1
Scaffold_idBomo_Chr15
NCBI non-redundant
(nr)		DNA_polymerase_alpha_catalytic_subunit_isoform_X2_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000731 P DNA synthesis involved in DNA repair
GO:0000785 C chromatin
GO:0001882 F nucleoside binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003896 F DNA primase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005654 C nucleoplasm
GO:0005658 C alpha DNA polymerase:primase complex
GO:0005730 C nucleolus
GO:0006260 P DNA replication
GO:0006269 P DNA replication, synthesis of RNA primer
GO:0006270 P DNA replication initiation
GO:0006271 P DNA strand elongation involved in DNA replication
GO:0006272 P leading strand elongation
GO:0006273 P lagging strand elongation
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0008283 P cell population proliferation
GO:0008408 F 3'-5' exonuclease activity
GO:0016363 C nuclear matrix
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
Transcript
Level		FPKM:2.58 TPM:2.79
ORF EntryO_BomoOtmSK10996_complete:A_BomoOtmSK_comp13720_c0_seq1
Sequence
(Nucleotide)
AAAGAATTTAACCTAATCAAAATATTAGCGTTTCTCGTAAATGTAAATTGTTTTAAACTT
ATATATGTGTACAAAAGAAAAGCTATTAAAAGAGAATGGCCGATTCAATAGCTGCTCAGC
GTGCGAAGCGACAAAAAACAGACCGACACGGTCGATTCTCGGCGTTTGAGAAGCTAAAAC
AATTAAAAGGGAAAGGTGTAAAGCATAAGTACGATGTGGATGTGCTTGAGAATGTGTACG
ACACTGTTGACGAGAAAGAATACACAGAAAGAGTTCTACAGCGACAAGAAGACGATTGGA
TAGAAGATGATGGTACTGGCTATGTTGAAGATGGAAGGGAGATATTTGATGATGATGATG
ATGCTTATGAAGCAACAAATAGTAAAGATACAGGCAGAGGACAGAAAAGGAAGGCCAAAG
TTGCAGCACAGTCCTCAGGAAAAGGGAATATACGAAACTTAATTGGTAACATGCCTAGTA
AGAAAAAAGAGGATGTAAAGATTTCAGAAGATAATATTTTATCTGATATTATATCTGATT
TGGATGCTAACACTGCATCAAATGTAGTTAAATCTACACTGCCTATAACTAAAACTAACA
TTGTGGATACAAGTAAGAGAGATGCACAAAACTACTTCAAAAGTCTTTCTGCTAACGTCA
AGAAACCTTCTGTACTAAAAACATTCAAGGAAGAAAAGGAGACTGAAAGTATTGAGCCAG
ACACATCTGCAGTACAGTGTGAAAAAAATATGATAAATCATGTGGAAAATGAACCTGCAA
ATAAGAAAATTAAGAAACCAGAATGGAACATTGAAAAAGAAATCAAGCAAGAACTTAATG
AAACGCTTACTCCTAATATAGAAGAATTTGAAACACAAGATATTGACTTTGACGATGACT
TCAGCAATGATGCAAAAACGTCCCAAGTGAAAAACGAGCCTGTCAGTACCGGAACTAGCA
CCGAAAATCCTACAACAGACATCACTGATGAATTTTTCAATGACGAATTTGAAATATTCC
CTTTACCAAAGAAAGAAACTACGAAAGAACTGAAACCATTGACTAGTACATGGCCAGAAC
AAGGAGGTGACAACCAAACTGTGTCTTCAGTTCAAAGTGATGGTCAATTACCACTGCAAA
CCAATGAAACAGGGGAGAAAGTGCTTAGATTTTACTGGCTTGATGCATGGGAAGATCGGT
TCGTAAAACCAGGCGTTATATACCTATTTGGAAAAGTTTATGTTGACCCATCAAATAAGA
AGGCTGGATGTGTATCATGCTGCCTTGTTGTGAAGAATGTTAATAGGCAGATATTCCTGT
TGCCAAGAGAATATAAACTTGACCCAATAACCCTTGAGCCAACAGAACAAGAGGTGACGA
TGATGGATATGTATGAAGAGTTCAATAGTTCTGTGGCAAGTGAACTCAGTCTCAAAGAAT
TTAAATCACGAAAGGTCACCAAGAACTACTGTTTCAATTTGCCAGATATACCAGCTCAAT
CTGATTATTTAGAAGTTAGATACTCGGCAACTCTCCCACCGCCTCCTACCAACAAAAAAT
ATTTGACATTCTCACATATATTCGGTACGAACACATCTTCGCTAGAAATATTCCTGTTAG
AGAGGAAAATCAAAGGGCCCTGTTGGCTTGAGATCAAGAACCCGGAAAGCGTCCAAGCCA
AAGTGTCTTGGTGTAAATTGGAAGCTTCCTGTGAGAAGATGGAACACGTTAATGTTGTCC
GGACGGATGGTGACTTAGAACCACCTCCGATAGTCACAGCTGCTATAAACATGCGCACGA
CTATGGATCCGAAAACGCGAAAAACAAAGATTGTGATGTTGAGTTGCTTGACTCACAGCA
GTTTCCCGATACACAAGTCGCCTCCGAATCCACCGTTTCAACAACATTTTAGCATAATAA
CAAAATGTAACGAAATATGGCCATTGGATCTAAAACAGGCTCTACCGCAATATAAAGCGA
CGAAATTAACCAAATGCGATACAGAGAGAGAACTCCTCAATTATTTCATGGTGCAGTTTT
GGAAACTTGACCCGGACTTGGTCGTCGGTCACGACCTGCAAGGTTTCCAACAGGACCTGC
TCATAGGGAACGTACTGGACCTCAACATACCGAACTGGTCGCGGCTGGGCCGTCTGAAGA
GATCTGTCGCTCCGCAGAGGAAATTCGCAGCGAAAGACGCGTTCTTAGGCCGTTTAGTTT
GCGACGTAAAGATATCCGCAATGGAACTTATCAGGGCCCGGAGTTTTGACCTTGAAACGC
TTTGCACGAATGTATTGAAAATGAAAGAGGGCGAGCGTATCGATGTAGCACTCGAGGATT
TACCGAAGTACTATGAAAACAGTAGGGATTTATTCCAGCTCGTGTCGCTGAGTATGCAGG
ACGCGTCGTACGTGCTGAGGATAATGTGCGAGCTCAACGCTATACCTCTGGCTCTTCAGA
TCACGCAGATAGCGGGCAACGTCATGTCTCGAACCCTACTCGGCGGCAGATCTGAGCGCA
ACGAGTTCTTATTGCTCCACGCCTTCACTGAGAAAAATTATTTAGTACCTGATAAGATTT
ATGGCAAGAAGACAACTGCTGAAGACGGAATTCAAGAAGACCAAGAAGACGGTGCAAACG
CTCCCAAGAAACAAGGAAAGAAAAAGGCGGCCTATTCCGGAGGTCTCGTGCTAGATCCAA
AAAAAGGCTTCTACGATAAACTAATTCTACTCATGGACTTCAATTCCTTATATCCTAGTA
TCATTCAAGAGTATAACATTTGCTTTACGACCATTAAAAGAAAAAACGGGATCGTGTCGG
ATGAAGATGTGTCTAACCTTATATTGCCAGCACCGAAAACCGACTTAGGTGTTTTGCCCA
CGCAAATACGGAAATTGGTTGAAAGCAGAAGGGAAGTCAAGAAGTTAATGAAGTCACCGG
ATTTGGCGAGCGATCAATACATACAGTACAACATCCGACAAACTGCCCTCAAGCTAACGG
CCAACTCTATGTACGGATGTCTCGGGTTTTCGCACTCTAGGTTTTATGCGAAGCCGCTGG
CGGCGCTCGTCACAATGAAAGGAAGAGAAATTCTGATGGACACGAAAGAAATTGTCCAAA
AAATGAACTATGACGTTGTCTACGGCGACACGGACAGTATAATGATCAACACTAATTGTC
TTGATTACGACGCGGTTTTCAAAATAGGAGTGGATCTAAAAAAAGAAATAAACAAAAAAT
ACAGACAAATTGAACTCGACATAGACGGCGTGTTCAGATACCTACTTCTGTTAAAGAAAA
AGAAATATGCGGCAGTTTTAATTAGCAGGAATAAAAATGGTGAATTCGTTTTCACTCAAG
AACACAAAGGTTTAGACATCGTCCGTCGAGACTGGTCACAACTGGCCGCCGAGGCCGGGA
AATTTATTCTTAGTCAAATCCTTTCCGAACAGACTCCCGATGATCGGTTGGAAAGCATAC
AAAATCATCTAAATAAATTAAAAGACGATCTGATCGGTAATAAAATGCCCCTCTCGGTTT
TAACTATAACAAAGCAACTCACTAAAAACCCCAATGAATACGCTGATAAACATACGCAAC
CTCACGTTCAAGTGGCATTGAGGCTTAACAGTAAAAACAGTAGGAGATTCAAAAAAGGCG
ACATTGTGCCTTACATTATATGTGAAGATGGAACCGCTAACTCAGCCACGCAAAGGGCTT
ACCACATAGAAGAATTAAAGAATTCCGAACATCTCAAAGTCGATTTTAAGTATTATCTAG
CACATCAGCTACATCCTGTAATATCAAGAATATGCGAACCAATAGAAGGCATGGATCCAG
CCCGCGTTGCAGACTGCCTCGGCCTAGATCCCTCCGGATACAAACAAGCTGTTAAAAGAG
AAACTAACGACTCGGAAACTTATGAGGTCGAGAACGAACAAGAAAAGTACCGACAATGCA
AAGAGTTTGTCTTCGAATGCGTCGATGAAAACTGTAAAACTTTGAACAGAGTACGAGAAT
CGATCTATAAACTGGACAAAGAGAACATTTCGTTTTTAGATCGCTGTCAGAATGAAAAGT
GTAATGTGAAGCCGTTAGATTATTTATCTAGCGTGCAAAATCAGTTGAGCCTGCAAATTC
GACAGTACCACGCACAGTACTATGCGGGCTGGTTATCGTGCGAAGACCCGGCGTGTGGAC
ACCGTACCGCGAGATTGCCTCAGACGTTCGCAGGAGGCTACCCCCTTTGTAGACAATGTG
AGAAAGGGGTCATGTTTCGAGAATATACAGAAAAAGATTTATATTTACAGATAAACTTTT
TCTTGTTTCTGTTCGATCTCAGCAAAAGCAATAAATTAAAAGTACCAGTACCTCCAACGA
TTGTCTCAGGATTCGAAACGCTAAAGGAAATGGTTGAAGATTGTTTAGGGCATTCCGCCT
ACTCAATTATAAATTTATCAAAACTATTCAGATTTTTTACTTTGGACACCAAAGCCAACA
AAATGAAGGCGGAACCGACTGATTTAGATATTCTCCCAGAAACTGAACAAATAGACGCTC
TTCTGGAGATGGGTGTTTTCTAAGGTTATCAACTATTCAGTGTATCATATATATATTTTC
AAATATACGATTAATA
(4636 bp)

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