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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoOtmSK_comp13682_c0_seq2
Scaffold_idBomo_Chr4
NCBI non-redundant
(nr)		homeotic_protein_spalt-major_isoform_X3_[Bombyx_mori]
Ontology
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0001751 P compound eye photoreceptor cell differentiation
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0007379 P segment specification
GO:0007423 P sensory organ development
GO:0007424 P open tracheal system development
GO:0007427 P epithelial cell migration, open tracheal system
GO:0007438 P oenocyte development
GO:0007525 P somatic muscle development
GO:0007605 P sensory perception of sound
GO:0008584 P male gonad development
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0021782 P glial cell development
GO:0030539 P male genitalia development
GO:0035155 P negative regulation of terminal cell fate specification, open tracheal system
GO:0035277 P spiracle morphogenesis, open tracheal system
GO:0035310 P notum cell fate specification
GO:0042659 P regulation of cell fate specification
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045465 P R8 cell differentiation
GO:0045466 P R7 cell differentiation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046845 P branched duct epithelial cell fate determination, open tracheal system
GO:0046872 F metal ion binding
GO:0048098 P antennal joint development
GO:0048644 P muscle organ morphogenesis
Transcript
Level		FPKM:1.63 TPM:1.75
ORF EntryO_BomoOtmSK10887_complete:A_BomoOtmSK_comp13682_c0_seq2
Sequence
(Nucleotide)
TGGCGAATGGTGTGCCCGGCCGCACGCCGACACCGCCGCACGCATCGTACTTCGACCGAG
CCGAGTAGAGGGCTCCGCGCGCGAGTGTTCCCTGCTCCTGCCATGCACCCGCGCTGAGGC
CACAACATGCCGCGCGTTAAGCCAGCCTGCGTCCGCCGCGTCTCCATCGGTGAAAGTTCC
GGGTCGTGTTCAGAAGATGACATCCATCATGGTACGGACGAGGCGAGAGATAGACCGGAG
GCCCACATGTGCCCAAGGTGTCAGGAACAGTTCGAGAGCTTGCACGAGTTCCTCTACCAC
AAACGCGTTTGCGATGAAAAAGCAATGCAGATGGGTGAGGAAAGAATGCACTCCGACCCC
GAAGAAATGGTTGTATCCGGCGACGAGGAGATGGACGGTCCCAATAAACAATTAGATCAG
GTGCGACGACATCGACAAGATGCCGAGAACAACAACAGCCTCGAGGACGGCGAAGCGGAG
GTACCGGAAGCGGACGTTCCGCCGGTCGGGCTACCTTTCCCAGTCGCCGGCCACGTTACA
CTCGAAGCCCTGCAAAACACTAAAGTCGCTGTAGCACAGTTTGCCGCGACGGCCTTGGCC
AATAACACTGACAATGAAGCTGCATTACATGAACTGGCCGTTTTACAAAGCACACTTTTT
ACATTACAACACCAACAAGTGTTTCAGTTACAACTTATACGTCAACTTCAAAATCAGCTT
TCGCTTACACGACGAAAAGAAGACCACCAATCAAGCCCACCGCCGAGCGAACCGGAGCCG
GTTGCGCCTGTGCCTATCGCTCGATCACCGTCGCCGCCTCGTCCCCCAAGGGAGCCAACT
CCTGCAGCACCCACTCCCCCCGCTAGTCAGAACCTACCCTCCACTCATTCGCACCTAACA
CCAAAATCGGAACCAATCTCTGTTCCAAAAATTCCAACCTCGTCTCCGTCAATGATGACA
CACCCGCCTTATAGCTCCATATCTTCATCGTTAGCTTCTACTATCATTACAAATAACGAT
CCGCCGCCGTCTCTCAATGAACCTAACACACTGGAAATGTTACAAAAAAGAGCGCAAGAA
GTTTTAGACAATGCATCGCAAGGTTTGTTGGCAAATAATCTTGCTGATGAATTAGCCTTC
CGAAAATCGGGCAAGATGTCGCCATACGACGGAAAATCTGGAGGACGTAACGAACCATTC
TTCAAGCATCGCTGTCGATATTGCGGAAAAGTTTTTGGAAGCGATTCTGCCCTACAAATT
CACATCAGATCTCATACAGGTGAACGACCTTTCAAATGCAACGTATGTGGATCACGATTT
ACTACCAAAGGAAATTTAAAAGTGCATTTTCAAAGACATACCGCTAAGTTTCCACATGTG
AAGATGAATCCCAATCCTGTACCGGAACATTTGGACAAGTATCATCCACCTCTATTAGCA
CAATTGTCACCGGGACCAATTCCCGGAATGCCGCCCCACCCACTACAGTTTCCTCCGGGT
GCACCGGCCCCTTTCCCGCCAAGCTTGCCACTATATAGACCGTCACATCATGATTTACTT
CCGCCTCGCCCACTTAGTGACAAACCTCTGCCTCCGCACCCACTCTTTGCAATGCGGGAA
GAACAAGATGCTCCTGCAGATCTTAGCAAACCATCTGCACCGAGTCCCGCTCGATCAGCG
CAAGATTTATTTAAATGTGAACCTCAAGATGAGGAGAGTCAACGAGATTCTAGTTTTGAA
GAAGCTGACCGTGTGTCTCCGAAACGTGAACCCGAGGAAACTGATTTGGCACAAGAAACG
GAACAAGATCGGTATCCATCGACCTCACCTTACGATGACTGCAGCATGGACTCAAAGTAT
AGCAACGAAGATCAAATCGGCAGAGAGAGTCCGCATGTGAAGCCGGACCCCGACCAACCG
GAAAATCTCTCAATGCGTGGCAATACTACATGTAGCATCTGCTACAAGACATTCGCCTGC
AACTCTGCGCTCGAAATACATTACCGCAGCCACACTAAAGAACGACCCTTCAAATGCACC
GTATGTGACCGCGGATTTTCCACTAAGGGCAATATGAAGCAACACATGCTAACGCACAAG
ATCCGCGACATGCCGCCCGGCTTCGATAAGAATGTCGTCGGGGCGCCCTCTAGCGAGGAT
GGGCGGGATCAGAGTCCAGAACGGCGGTCGCCCGAAAAACTGGACCTGAAACGCTCTCCG
CCTGTACACGTGCCACCGCCTATGAACCACACACCATCCATCGACATGCCGCCTTTACCG
AAACGGCCCAGTGTTCCGAGTGGTCCGCCACATCCACCACCGCAGCAAACATCATCCAAG
CATTTATGCGGGGTGTGCCGCAAGAACTTCTCTTCGTCGTCAGCGTTACAAATCCACATG
AGGACACACACCGGAGACAAGCCCTTTAGATGTGCTGTCTGCCAGAAGGCATTCACCACG
AAGGGTAACCTCAAGGTGCATATGGGCACTCACATGTGGAGCGGCGGCGCTTCTCGTCGC
GGTCGGCGAATGTCTCTGGAGCTGCCCCCGCGGCCGCTGCACGAGCCCCACGACCTGCTG
CGGCGACCGGACCTATTCTACCCGTACCTGCCTGCGCCCTTCCTCAACGGCATGCAGCAA
AAGCTGAACGAAATATCAGTGATACAACAGAACGCGGGTCAAAACGGCGTAGCTGGAAAA
TTTCCAGGTCTACTGGGCTTCGGTCCTTTCGGCGCCGCTCGCCCTGGAGCGGCTTCTCCC
CTGGAGAGACCGCCCTCACTAGAAGGCGGTGACGAGAGACAGGCGGCGATGCGAGAGCTG
GCCGAACGCGGACGCGAACTAGCCGAACGCAGTCGACAAATGCGCGAAGAGGGGGAGTAC
AGGTCGTCGAGCAGTCACGGGGCACACGCTCCCCCGGTGGCGCAGACCTCGCCCCCCGCG
CCGCACCACCCTCACCCGCTCGCCTCGCTGCCGCCGCCGGCGCGCACCGAAGGTCTTACG
GTTTAAACGAACTCGAAACTCAAAATCCCGACTACATTCCAAAATAAATGACGAGCCGGT
CTCTTGGAGGACCCTGTTTCTTGAAACGAACTGATCGGCACTCACCGTTTCGAACCGAAC
GAACTTCGGTCGGGGCGGCGTCTTGTGTAAATTGTACAAAGAATATAGAGCAACAATTGA
TTGCGAACGGACTGATGACTCGCTGCCGAGAGCGTGTTTTAGCATAATTTACGTGCTGAG
TGTAGCGCTATATAACTTTGTTATTCCATGTGTTATTAAGCCTAGAATTAGTTTAACTTT
ACGCACGAGTACGGGCCTGGGGCAATCGGGGCTCCTCGCGGGCTCCAAGTTTATGTCATT
ACTCTGTGATAGTACACATTAGAGGATGTGTCTCGCTGACCGGAAGACGCGTAGCAAGAC
CACTACCGGAATTCGTCATCCGCCAAACTCGAATGTGCTACATCAAAACATATAAATTAT
CCCAAAAATTTATTTCATAAAGCTATATATTTTAAACTTACGTGTAAATAATTTTGTATT
ATAGCGTTTAGTAGAGAATGAATGAAACTATAAAGTGAATTTAAATACTTATTATATTAG
AATACTAATGTACAAACACAACTGGAGTGCAATATGCATGATTTTGTCTTTTATCCACAT
TCCAAATATACGTCCTGAATAATATTGACGTCATAAATTATCTAACTTTTCCTTACATGT
CAATCAGAACAGACATTTTTCCTGTGTAATAATCAATGCCTATTTATAATGCAAAATACC
ATTAGAGTGAAATATATCAATTTTACCAAACGATTTGTGTAGATGTCTTTTGTAATAGTA
ACAGAGGTTAATGACATAACATTCATATCATGTAAATTAAAGTATTTGCATTTGAGGTCT
ACATAGTTTATAAGTATTTAGAGTCATAGCTATTGTAATGCTTTAGAATACTTCAACATA
TCTTTGTAAAAAAAGTGAGCGACTGGTGTTATTGAGAAAATAAAATGTAAAACTAGAGAA
ATTATATAGTGTAGGTACTTATTTGTAGGTAGTACCGGCACTTGCAGACTGACCGAAATA
TGACCACATTTTCTTTTAAAAAACAAAAAAAAAGAATAGATATATTTACTAATATGTATT
TCCAAAACTGCATTTTGCTCGATGCTTTTTAGACGTTGTAGTCCAGTTGCTAATTTATAC
AATTAATTTTTAACGTTTCATGTATTTTATAAATACCTTCTCAAGTAATCTGTGTATAAA
TGTCCTAATAAATTATTTATAAATTATAAATCATGCATACACACTCTTAGTGCGACGGAG
GGTAGATCCACCAGTTTCGTAAGTCTGCTGACCGCATTGATGCATTTTAATCGCGATCTC
ATTATGAACTGAAAACTTACCACAGAGTAAAAAAATAACAGTAAGTATGTTATTGAGGTT
TCTTCGTCTAGTGGATCTATACTCAAGTGACGTATCGGCGATAGGCCCTGAACGACAAAC
GTCTAGATAAGACTCATAGCACCTACAAGCTATTATCAAGTTGCAAATAGGTATTAGAGT
AGCTCTAGTTATAAATATGATGTGTCGTGTCATGTCAATATAAATAATCAATGTAAATTA
TTAAATGTTTATGTAAATGTCCAAAAAGTATTCAAATTATTTAAAAAAGAAATTATACTA
ATTTTTCTTTTTCAAAAAAAA
(4701 bp)

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