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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoOtmSK_comp13649_c0_seq1
Scaffold_idBomo_Chr12
NCBI non-redundant
(nr)		splicing_factor_U2af_38_kDa_subunit_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005686 C U2 snRNP
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0008187 F poly-pyrimidine tract binding
GO:0008380 P RNA splicing
GO:0010906 P regulation of glucose metabolic process
GO:0046872 F metal ion binding
GO:0071011 C precatalytic spliceosome
GO:0089701 C U2AF complex
Transcript
Level		FPKM:8.71 TPM:9.39
ORF EntryO_BomoOtmSK10781_3prime_partial:A_BomoOtmSK_comp13649_c0_seq1
Sequence
(Nucleotide)
TGCGTGGCGGCTCGCGGCGTCGCACGCGGGAGCGGGAGCGGCGCCGTCTCTCGCGGGAAC
GGGACCGGGAACGACGACCGCTCTTGCGACGGGAATACAGGTATCTTCTTAGTTCTCTTG
AAATAGGTTTCAGATGCATGAAGTTGCAAAATCCACTTCGGGTGCATTCTCCCATCTCAT
ACTGACGACAGCATGCTTCGCGAAAATCCGTCACCGGCGAGAGTTCTGCATAGACTGGCC
GGCCTCCAAACCAGCGGTTATTTAAATCGTTAACTGCTTTCTCAGCATCTTCCTCTCGAC
GAAACTTAATGTAAACATTTCCAACTAAATGGTCTCCAAGATTGTCACAAACATTCATTT
CTTCTATCTCACCATATTTATCTTCGCATTCAACAAATACATCTTCAAAAAAGTTGTCAT
AGTGTTCCTGCATCTCTTCATCAGACACATTGGCAACAACCAAATGACTGCCATCGGCTG
ATTTCGCAGAATTTTGTGGATTTACATACAAGTTTTGTAGTAATACAGTCTGAGAAAAGG
TTGGCTTGTTATGAATGCGTGAACAGCGATCACCGTGTCGGCACGCTCCAATTTTGAAGT
AAAATGAGCAGTTTACTTTATCCTTTTCTGTACCAAATATAGCAGCCAAGTACTCTGCCA
TTGTTATATCGTAGAAACGAACACCGGATCAAACCAATATTGTCAGCAGATGTATCACCA
ATGTAGGTATTTAAACGTATAATTCAGATAACAATGTGAAAATATCATTTAAAATTTCTA
ATTATAACTAGTATTTAACTATTTAAGACAATCATGTCAAATGCTACTGGTATATCTAAA
ATACCGAAGAAAAGTCCATGAAATCTCTGAAATTAAAAATTG
(882 bp)

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