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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoOtmSK_comp13511_c0_seq1
Scaffold_idBomo_Chr19
NCBI non-redundant
(nr)		LOW_QUALITY_PROTEIN:_cartilage_oligomeric_matrix_protein_[Bombyx_mori]
Ontology
GO:0002020 F protease binding
GO:0003417 P growth plate cartilage development
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005518 F collagen binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005615 C extracellular space
GO:0006915 P apoptotic process
GO:0007155 P cell adhesion
GO:0008201 F heparin binding
GO:0031012 C extracellular matrix
GO:0043066 P negative regulation of apoptotic process
GO:0043395 F heparan sulfate proteoglycan binding
GO:0060173 P limb development
GO:0070062 C extracellular exosome
Transcript
Level		FPKM:29.06 TPM:31.33
ORF EntryO_BomoOtmSK10387_complete:A_BomoOtmSK_comp13511_c0_seq1
Sequence
(Nucleotide)
TTTTTTTATCATTAAAAAATATATTCATTTAAACTTAACAACTAACATAAGCACATCCGT
ACGTCACGTTCTGCGCGAACGAGAGTATTTACAGATTAATTGCATTAATTATAAAAAATG
TTAATCGACACGTCCGTTCGTCTGTGGCTACTCGTTTGTGAAATAATCTTGGTCGATTTC
GAAATGGTTCCTTGTTGAAATCTCCGATGCTATGCTCGCCGGAATCTTATCATTACATTT
GTAGAGTAGATTAGACCATATGATCATTTCCTGGGAGAAGCAGAACACTCCAAGTCTCCC
CCCCTTCAGGGTGAAGTCGTAAGTGTTCCCAGAGTCCGCGACCAGGCGGTTGTTCTCGTA
CATCTTCAGTCTGATGAGACCGATCTTGGGGCGGTGGAGGAGCTTCCAGCGGTACGCCGT
CTGCTCGCGCCAGCCCACGTTGCGAGGGTCTTTCCAGAGCAGGGTGACCTGATCCGGGGT
AGAGTTAGTATTCCAGAGAGCGTTCCTGAGTATCTTCCCCGGGCCAGTCTTCGAGTTGAC
CAGCTTGAGCTGTATGCCGTTCTCGGCGACCGCTCTGAACGGAGTCTTCTGCCAATAAGT
CTGTTTATCCTTCTTCCACATGACCACATAAAACCTCTTGTTGCTTTGGTATCCAAAAAT
AAATCCAACATAATCGTCATCTATCTTTGTGTTGACGAAGATGGTCCCCTCGTAGTCGAC
TCCGCCGAAGCTGTCGAATCCGACCGCCAGACCAGGGTCCGAGTTCAGGGTCTGCAGGAT
CTCAGCTCCGTTGTCCGTCACCCTCCAGTTGGGCTCCTGTTGAGACTCGCCTTCAGGGTC
CAATCGGACTGTGGTGAACTGTCTGAAGTCCGTTCGAAATATCTGCGAATTGTTCGGGCA
GTTGTCCAGCTCGTTGATGACCCGGTCGCCGTCATTGTCATTGTCACAGGCGTCTCCAAT
GCCGTCATTATCAGAGTCCTTTTGATCCCTATTGGGCACGATCTGGCAGTTGTCGTCCAG
ATCCGGTATCCCATCTCCGTCGTCGTCGTCGTCACAGACGTCGCCCTTGTCGTCGCGGTC
CACGTCCTGTTGGTCGCTGTTCGGTATCAGCGGGCAGTTGTCTAAGCCATCTTGTATCCC
GTCTTGGTCACGGTCTATATCGCTGTCGCACGCGTCGCCGACGTTGTCCTTGTCCGTGTC
CTCTTGGTTCGTGTTGCGGACGCGGGGGCAGTTGTCGCAGACGTCGCCGACGCCGTCCGA
GTCCATGTCGTCTTGCTGCGGATTGTACTTCCTGGGGCAGTTGTCCACTTGGTTCGGTAT
GTCGTCATCGTCCATGTCCGAATCACAGACGTCTCCCGTTCCGTCTCCGTCGGTGTCCTC
CTGGCGAGGGTTGTAGTGCCGGGGACAGTTGTCACAGGCGTTTCCTCTCTCGTCCGATTT
GTTCTCGTCGTCGTCCAACTGGTCCGGGTTGGGGGTCAACGGGCAGTTGTCAGGAAAATT
GGGAATCCCGTCTCCGTCTGCATCAGAATCGCACGAGTCCCCGATGCCGTCACCGTCCAC
GTCCTCTTGCCCGGAGTTGGAGACGTCGGGGCAGTTGTCCTTCTTGCAGCGAGGCTCATT
ACAAGGCAGCTGCTCGTCCGGATGCCCGTCTAGATCTCGGTCCAGTCCGCACACTGTACC
GTTGCCAGTCCAACCGGTATTACAAACGCACTTTTGTCCGAAACCACAGACGGCGTTGAA
TCGCCTGCAGTAGCTGGGGTCGCACCGCTTCACCAGCGAGTCCGGGTCGAAGCACGGCCT
CGTCGTGTTCACGTAGTAGTGCCCGCCGCAGGGAACGCAGATGTATGAGCCCGGGGTATT
GACGCAAAGCCGTCCTCTTGGACAGTTGGCTCGTCCGTCAGCGCACTCGTCCACATCCAC
GCAATGTTCCCTTCGTCTCTCATTGCCAGTGCCCCGCCAGCCCTGGCTACCTGTGAACCC
TGGAGGACACGGCCCACAGGTGAAGCCGCCTTCTTCGTTGCGACACGAGACCAGATCATC
ACAGGGCCGAATCAAATCGCATTCGTCCATATCCACGCACGTGTACCCATTCCACTGGTA
GCCGCTGGGACATCCCTCACACTCGTAATAAGGGCTGGTACTTTTGGGCATACAGCGTCG
CTCTCTACCGCAGGGCTTCTGAGCGTCACACACGTGCTGGCACTGCCGACCGTCTCCCAC
GTACCCAGTGGGACAGGACCCGCATTTAGGACCATATTGGGTCTCCTCGCAGCTCACACC
TTGAAAGCACGTGTTTGCTCTGCAGGATATCCTATAGCACTCGACTCCATTCCCGTGGAA
CCCAGAAGGGCACTTGCCGCATTGGTATCTGCCGTCTGGTAAGTCCTGGCACGGTACTCG
TCCTCCAAAGCAAGGGTTAGCGCTACACGCAGTCCTGCAGGTCTGGCCATCACTCGTCTG
TGACCCTGGGCATCTCTCGCACCGGAAACCTTGGTCCGTATCGACGCACCTCTCCCCTTG
TGAGCATGGGCGTCTGTTACACAGTACGGGTCTGCACCTCCGGCCGTCGCCCTCCATGCC
GCGCGGACACGACCCGCACTCGAACCCCGCGACAGTGTTCCGGCATTCGACCCCAGGGTA
GCATGAGGATCCGGAGCATCTCTCCACGGGGGGCGGGGTGACGGGTACTCTGTTGCAGCA
CTGGTGGAGTTGAGACCTTAGGCTGTCTATTGTGTGCTTCTGATCCCCGACCTCCCGGCG
CAAGTGCTCGATGATCTGACGCAGTAGGGTCAGTTGACGGATGACTTCATCATCACACGA
TTCAATGGCAGACTGAGGTATATCCCCTCTTGAAGGTTGCGGCAGAATACCGTTAGCTTC
CAAATAATTAGTAGCATCATCTCCTTGCATTTCTTCCTCTCTGTCCATGAGAGCTTCCTT
CTTTCTGAATTCTTGGACTTCTTCTACGTCCGATTCAGGTTCGTCCAGTCTCAGTAGAGT
TGGAGGTCTGATGTTGTCTTTTGCACAACTCAAAGATTCAACCGCTGCTTTTTCGCTGCC
GTATATTTCGACTGGAGCGTTTTCTTCGTGATACAATTTCGTCTTCTGGTCCCTCAGTAT
ATCCAGAAGGTCGTAAGTCCCGGACATCGAATGCCAATGGAGTGGAACGCAACCGGCGTA
TAGTCTGACGCCGTTTGACGAAGCCACCAACAAAAGTGTTCCTTTTTCATGATCTTTGAG
ACCCCACGAAACAGATTTTAGATGGCCTCCGTGTAGACTCTCCAAGGATACTTTGTTTGT
TTTCCTGTTGTAATACAACGATATGGATACATCATCTTCGCTCTTAGCGTGGAGTAACTC
CTCGCGTCTTGCACTCTTCCCGTGCGGTCCACGCACCAGTATCGCGACTTCTCCTCGGTC
ACGGGCTGACGAAGCAGCTGCGATTAATTCTTCTGTTGCTTCTCGGTCCATAGTGAGGGA
GTTCACCATCGCCACCACAGCAAGGACAGAGAAGATTCGTGCGCACATGGCCGGAATCGC
CATGTCGCGTTATTGCTAATCACTTTATTCCCGCCAATTTAAAATCCCGCGATTTTTTTT
TCAGTTAGCAGGAACTGCATGCGCAACGCGTGCGCAAACTACTCACGCACAACGCGACTG
ACAAAACTGGCAACTGACAAGTCACCCGAAGGAATCACAGCTTCTACAGATGATGTCATT
TTGTTACTTCGATATCATAGGATCAATTATTACATCATTTAATAAAGTATTTCAATTTAA
TGAACATACAAATATGAATTGCGA
(3804 bp)

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