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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoN4EE_TR30579_c2_g1_i2
Scaffold_idBomo_Chr9
NCBI non-redundant
(nr)		PREDICTED:_uncharacterized_protein_LOC106142857_[Amyelois_transitella]
Ontology
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004527 F exonuclease activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006364 P rRNA processing
GO:0006402 P mRNA catabolic process
GO:0016020 C membrane
GO:0016075 P rRNA catabolic process
GO:0016787 F hydrolase activity
GO:0043488 P regulation of mRNA stability
GO:0043547 P positive regulation of GTPase activity
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0071034 P CUT catabolic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
Transcript
Level		FPKM:30.24 TPM:40.28
ORF EntryO_BomoN4EE12987_complete:A_BomoN4EE_TR30579_c2_g1_i2
Sequence
(Nucleotide)
TACACGATTGACTGATTGACTAACAGGGAGAAGAAAATTATTTTAAGTTTATTATTGAAG
CCGTCGAGGCCTAAAGGATAAGACGTCCGGTACATTCGTATCGAGCGATGCGATTGCACC
AGTGTTCAAATCCCGCAGGTTACAATTTTTTCTAACTTATAACACGTTTACGAACGATTT
CCACGATAAATTAATATAATTATCATTGTGTAATTTTAAAAATGAAAATCGCAAGAAAAA
TCACAATTTTCGTGCTTACGAATATTTAGCCTCGCGCGGGAAGGTATTGCATCATCCTGC
TTACTTGTTAGGGGTTTTGAGAATAGCTGTTCCACTATAAAACTGAGATTTAGAACTCAT
GACTCAAGTTGGTTGCATAGTTTTACTCTGTTGTCTATGGGCTTAACAGATGGACCATGA
CGAGACGATAGACGAGCATTCATTTAAGAAATGAACAAAAATTGGACTGTTACATTCAAT
AATTTGTTTACTTCAGCTAATTTGTTTACTTAATATATACTAGAACATGTTCTTCCTTAT
TTACAGTTGTACGTGTGAGCAGACATTTATGGCTTAGACTGCTGTCCAGTAGATATCCAG
ATTTCGAATTCATCAAAACTGACACAGTCAGAACATTGCTGGACACGCATCGGAATCAGG
GGATCATTAACGTACTACTGGCCGTGAAAGGTAATCCGAACGTCGATGAAATCAAAGAAA
AACTCATAGAGCACGTTATTGACAAGCGAGATAGGAATGGACAGTTCATGTTTCCAAGGC
TACGACATTTACTCGTCTCATGCTGGGGCAACTACGCTTGGGATGTCAACGTGCGTTTTC
GGTTTGAAAACCACTTCATCGTAGCTAATGCTGTTTACAGAGGTCGACCGGTTACAGAGA
GTAATATACAGGAATACATCAGTGACATCGTATCAAAATATTTCTCTCCAGACCAACCGC
CCTGGCAATACATAATAATACCGTGTGCAGCTACAGAACCAAAATATTATATTTTAGTTC
GCGTGCACCATCTGCTACTATCCGGCGCGAAGTCTATTAACATCGGAGATTTATTACTGG
TCGAGCAATTAAAACAAACCGATAGAATGGCTCAAGAATATACACAACAAAGCCCTTTAA
CGAAATTATTTCCAACGCCTTCTGCTATACCTCAATTATGGGAAAAACTTCATGAAAATA
TGTCGAATACATGGAACGAATTTGTTTCTGAATACGACCCCGTCGAAAGCCCTCGTGCTT
TGAAAAGCATGCCGGGTGCGTTCCACGTCGCCGGTCTGTTATTGATATCCAGCGTGAGTG
CTTTGAGAGAACTCAACAAGAAATCGAATGGCAGAAACAGAGCCACTGATGGTCCGATCA
CAGCAACTACTCTACTTGCAGCAGTCAGAAGAGAATGTAAGAGGAGAAGCTTAACTATAA
TTAAAGTTTTCTTGTCACCGCTAGTAACAGCAGACCCGAGAAAATGGCCTAAAAGAACAT
TTAAGACTATCACGACATCGACTGTTTTAATGTTGAAATTACCGTTTCGCGTTCGCGATG
AAATTTTAGCTTTAAACGAACTAAAGAATACTGGTCACGTAAAGCAGCCTAACACTTTAA
CGTGGAGGTACGGGGAATTGGCGCAGCTTTGCGTGAGAGCTACTAATGAAGCGTGGAATG
GCTTACTAGAAATTTATAGGGCTCCAGCAAAATTGTGGACGGACACCATTAGAACGGACG
ATGGGAAGCGACACTTGTTACAAGCCGTTTCTCTGTGCGGACGGAAGGTTATATCATGGT
CTCGTCCCGTATCTCGGTCTGCAATCGAACGCGTGGCTCGGGCGTTGGGCGTATCATCGA
CAGACGTCGTTTTGTTCGCCGCAACGGATGCATTACGAGCATTCTTTGAACAAGCACACG
GGGACCCTCCGGACATTGTGCTCACAACAGCTAGGGCCGCTTCAGAAGATTTCCTATTCA
CTTTCGCGGAGGGCCAGGGGAAGATGTATAAAAAATCACAAACTGGTGGTATGGTCTGTC
TGACCCTGCCTATAGGCGCGAGTCCACGTCGTATCGCCGCCGTAGTGGAACAAGCGTGCA
ATAGACAGCAGGCATTGGCCGGGGCCTGGGCGGCCCAGGCTCGATGCGGTGCATTAACTA
GAGCTGTTCCTTCTCCTCTCGCACGATTAGCATTGAATATACTGTCAAGAAGATACGCAG
TGTCTTATGCGGAAATCAACGCACCTCTCAATGCCAAACAACGGGCCACACTGTGGGGTC
AGACTGTCGACCACGTTATCTATTGGCGCCCGCCTCAGGCCAATATCAGTATGTCACTAA
CAGTGATACAATACGGGGAGACGGTGAGGCTTGCCGTGATGGCGGACGCGAGGCTGTCTC
CGTCACATTCCGCCCCCACCACGCGATGGCCCGTCGCAGTCGAGCAACTAATCAATAAAG
TCGATACGGAAATATCTCGCATAGCCACAACACTACAGCCCGACATCCCTATTACGGTCG
AAGCTCGAGAAGCTGACGACACTTACGAGGCAGAAACGTCGGGTGACGTCACCGGCTCGA
GCGGACTGAGGCCGCCGGTTTTGACAGCTGTCAGTCCGCCGCCATTGCGACGCAGAATGA
CGCACCACTAATAAATTAGTATCAATTAATGCGCTCTGCGACGATGCAGTGCAATACACT
AGTCGACCGAAGCAAGTTTTAAGTTGCGAGGGAAAGAGTGAGGCAACTTTGTAATATAAT
GTAATGTGGGAGTGAACGAATATGACTATGATCTTAAGAGAAATGAGATTCAAATATTTT
CAAATTCTAAATACTATATACGAGCAATATTAAAATCAATAATGTATTGAACGATACATA
ATTTTGACAAAACAGAAGACTGATGATATTTTCTTTTTAACAAATAAAGAAATCAATTAA
AATATGCATTATTAAGGATAACTCATAGAGCTGAATCATGCTAATAGGTTCACCTAAAAA
AAGTACTACGTTAACGTAAAAAATACAATGGAAAATTGTGAACCAACTTTTTTTGAAGTC
GGTTAAAAAATAAATTTCAATAATACAAAATGCACAGGATTCACAATATAAAATACCATA
TTTTATTACATTTTGTATTTTATTTCACACCTCATTTCCTTCTGGATTTCCTCTTTTTAC
TGGGTTTCGGGGCAGCGGCGGCTGGGATCTCTCTCTTCTTGTGAGTCTTTTCCGAGCTTG
GCGCTGCGGTGTCTGCGACGTCGTCGACTTCCATGTTCCCCGCGTCTGGCACGTAGCTGA
AGCCGGGCACGTGCGGCTCGACCAGCTCGAACACGAGTTTCCTGTGCTGAAGATTCGAGC
TGTCCAAGCTGAGACGGACCGTTAGCTCGTCGAACGTCTTCAGCACGACGTCCCCGCATT
TCTGAACGTGTTCCTCTTCATTATACGTGAATTTTTCAGATGGTAAATACAGAGGTCCTT
CCAGTCCATATTTAGGTATCAATACTTGCAGGGCGTTCCGCTTCACAGCCAGTACAACTG
CAGACTCTATTTCTACTCTGTTCTTGAATAAGATGTGAGTGTTGAGCGCCACGGAGGCGC
GGCCGGCGAGCTGCGCGTGGCGGTGCCGGTAGTTGAGTGTGTCGGCGAGCGCGGCCTGGC
GGCGCGCGTCCAGCAGCGCGGCGTGCGGGCCCGCCCCCGCCACGCTCGCCGCCAGCAGCC
GGTGCACCACCACGTCCGCGTACCTCCGTATGGGCGAGGTGAAGTGCGTGTAGATGGGAC
AGGCCAGTCCGTAGTGGTAGTAGTGGTCGGCGGCGAGGCTGCCGCTCACGAAGTACGCGG
CCTGCTGCATGCAGCGCGTCGCCATTATGCGCAGCAGCGTGTTGAAGAACGGCCGCTCCG
GTATCACGGCCTCGTTCAGCGATTTCGAAAACGATTTGTTCGTTGACACGTCGATTTCGA
AGCCCTGTTGTCTCGCAGCTTTTAAGAAAGTATCAAAATTAGCAGGAGGCGGCGCCGGGT
GTCTCCGCAACATGGCACATTGAGGGAATTCTTCTAGAATCTTCTGAGCCACGCTGGTAT
TGGCTAACAACATGAATTCTTCTACCATTGAGTTAGTGTCAACTATCTTCTTGGCTTGCA
CTTCGATTGGGTCGTGAGTCTCAGAGTCTACCTGAAATCGTATCTCGGGCGAGGCCAGTA
ACAGGGCACCACTGTCCAATCGCTTTTTCTTAAGCTTCTTAGCGAGTTTGTTGAGTACGC
GCAGAGATTTCGCTATCTCGTCTTTGCGACTCGAATCGTCGATTGCGATCTGAGCCTCTT
CGTAAGTCATCGCAGCTTTTGACTTTATGATACTTTTGTGGAATTTCGTAGACAAGACAT
TAGCGTTCTCGTCCATCTCCCACACGCACGAGAAGGCGAGCCTTTCTTCGCCGCCTCTAA
GTGAGCACAGGTTCGAGCTAAGTAACTCCGGCACCATATCGATCCTCCTGTCGACGAGAT
ATACTGTAGTTGACCTCGAAGCGGCCTCCTTGTCCAGGGCGGTGTCGGGCTTCACGAAGT
ACGTGACGTCAGCGATGTGCACGCCCACTTCGTAGGTCGCGAGCCCGTCGCTGGAGCCCA
GCCTGCGGGCGTGCAGCGCGTCGTCTATGTCCGTGCACCCGGGCGGATCCACGGAACATA
CGCACACGTCGCGTAGATCTACACGTTTCTGCCTTTCCTCTTC
(4723 bp)

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