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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoN4EE_TR30579_c2_g1_i1
Scaffold_idBomo_Chr9
NCBI non-redundant
(nr)		PREDICTED:_exosome_complex_exonuclease_RRP44_isoform_X1_[Amyelois_transitella]
Ontology
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004527 F exonuclease activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0006402 P mRNA catabolic process
GO:0016020 C membrane
GO:0016075 P rRNA catabolic process
GO:0016787 F hydrolase activity
GO:0043547 P positive regulation of GTPase activity
GO:0071034 P CUT catabolic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
Transcript
Level		FPKM:57.91 TPM:77.13
ORF EntryO_BomoN4EE12984_complete:A_BomoN4EE_TR30579_c2_g1_i1
Sequence
(Nucleotide)
TACACGATTGACTGATTGACTAACAGGGAGAAGAAAATTATTTTAAGTTTATTATTGAAG
CCGTCGAGGCCTAAAGGATAAGACGTCCGGTACATTCGTATCGAGCGATGCGATTGCACC
AGTGTTCAAATCCCGCAGGTTACAATTTTTTCTAACTTATAACACGTTTACGAACGATTT
CCACGATAAATTAATATAATTATCATTGTGTAATTTTAAAAATGAAAATCGCAAGAAAAA
TCACAATTTTCGTGCTTACGAATATTTAGCCTCGCGCGGGAAGGTATTGCATCATCCTGC
TTACTTGTTAGGGGTTTTGAGAATAGCTGTTCCACTATAAAACTGAGATTTAGAACTCAT
GACTCAAGTTGGTTGCATAGTTTTACTCTGTTGTCTATGGGCTTAACAGATGGACCATGA
CGAGACGATAGACGAGCATTCATTTAAGAAATGAACAAAAATTGGACTGTTACATTCAAT
AATTTGTTTACTTCAGCTAATTTGTTTACTTAATATATACTAGAACATGTTCTTCCTTAT
TTACAGTTGTACGTGTGAGCAGACATTTATGGCTTAGACTGCTGTCCAGTAGATATCCAG
ATTTCGAATTCATCAAAACTGACACAGTCAGAACATTGCTGGACACGCATCGGAATCAGG
GGATCATTAACGTACTACTGGCCGTGAAAGGTAATCCGAACGTCGATGAAATCAAAGAAA
AACTCATAGAGCACGTTATTGACAAGCGAGATAGGAATGGACAGTTCATGTTTCCAAGGC
TACGACATTTACTCGTCTCATGCTGGGGCAACTACGCTTGGGATGTCAACGTGCGTTTTC
GGTTTGAAAACCACTTCATCGTAGCTAATGCTGTTTACAGAGGTCGACCGGTTACAGAGA
GTAATATACAGGAATACATCAGTGACATCGTATCAAAATATTTCTCTCCAGACCAACCGC
CCTGGCAATACATAATAATACCGTGTGCAGCTACAGAACCAAAATATTATATTTTAGTTC
GCGTGCACCATCTGCTACTATCCGGCGCGAAGTCTATTAACATCGGAGATTTATTACTGG
TCGAGCAATTAAAACAAACCGATAGAATGGCTCAAGAATATACACAACAAAGCCCTTTAA
CGAAATTATTTCCAACGCCTTCTGCTATACCTCAATTATGGGAAAAACTTCATGAAAATA
TGTCGAATACATGGAACGAATTTGTTTCTGAATACGACCCCGTCGAAAGCCCTCGTGCTT
TGAAAAGCATGCCGGGTGCGTTCCACGTCGCCGGTCTGTTATTGATATCCAGCGTGAGTG
CTTTGAGAGAACTCAACAAGAAATCGAATGGCAGAAACAGAGCCACTGATGGTCCGATCA
CAGCAACTACTCTACTTGCAGCAGTCAGAAGAGAATGTAAGAGGAGAAGCTTAACTATAA
TTAAAGTTTTCTTGTCACCGCTAGTAACAGCAGACCCGAGAAAATGGCCTAAAAGAACAT
TTAAGACTATCACGACATCGACTGTTTTAATGTTGAAATTACCGTTTCGCGTTCGCGATG
AAATTTTAGCTTTAAACGAACTAAAGAATACTGGTCACGTAAAGCAGCCTAACACTTTAA
CGTGGAGGTACGGGGAATTGGCGCAGCTTTGCGTGAGAGCTACTAATGAAGCGTGGAATG
GCTTACTAGAAATTTATAGGGCTCCAGCAAAATTGTGGACGGACACCATTAGAACGGACG
ATGGGAAGCGACACTTGTTACAAGCCGTTTCTCTGTGCGGACGGAAGGTTATATCATGGT
CTCGTCCCGTATCTCGGTCTGCAATCGAACGCGTGGCTCGGGCGTTGGGCGTATCATCGA
CAGACGTCGTTTTGTTCGCCGCAACGGATGCATTACGAGCATTCTTTGAACAAGCACACG
GGGACCCTCCGGACATTGTGCTCACAACAGCTAGGGCCGCTTCAGAAGATTTCCTATTCA
CTTTCGCGGAGGGCCAGGGGAAGATGTATAAAAAATCACAAACTGGTGGTATGGTCTGTC
TGACCCTGCCTATAGGCGCGAGTCCACGTCGTATCGCCGCCGTAGTGGAACAAGCGTGCA
ATAGACAGCAGGCATTGGCCGGGGCCTGGGCGGCCCAGGCTCGATGCGGTGCATTAACTA
GAGCTGTTCCTTCTCCTCTCGCACGATTAGCATTGAATATACTGTCAAGAAGATACGCAG
TGTCTTATGCGGAAATCAACGCACCTCTCAATGCCAAACAACGGGCCACACTGTGGGGTC
AGACTGTCGACCACGTTATCTATTGGCGCCCGCCTCAGGCCAATATCAGTATGTCACTAA
CAGTGATACAATACGGGGAGACGGTGAGGCTTGCCGTGATGGCGGACGCGAGGCTGTCTC
CGTCACATTCCGCCCCCACCACGCGATGGCCCGTCGCAGTCGAGCAACTAATCAATAAAG
TCGATACGGAAATATCTCGCATAGCCACAACACTACAGCCCGACATCCCTATTACGGTCG
AAGCTCGAGAAGCTGACGACACTTACGAGGCAGAAACGTCGGGTGACGTCACCGGCTCGA
GCGGACTGAGGCCGCCGGTTTTGACAGCTGTCAGTCCGCCGCCATTGCGACGCAGAATGA
CGCACCACTAATAAATTAGTATCAATTAATGCGCTCTGCGACGATGCAGTGCAATACACT
AGTCGACCGAAGCAAGTTTTAAGTTGCGAGGGAAAGAGTGAGGCAACTTTGTAATATAAT
GTAATGTGGGAGTGAACGAATATGACTATGATCTTAAGAGAAATGAGATTCAAATATTTT
CAAATTCTAAATACTATATACGAGCAATATTAAAATCAATAATGTATTGAACGATACATA
ATTTTGACAAAACCGAAGACTGATGAAAAAAATAAATCAATTAAAATATGTATTATTAAG
GATAACTCATAGAGCCGAATTATGCAAATAGGTTCACCTAAAAAAAAAGTACTACGTTAA
CGTAAAAAATACAATGGAAAATTGTGAACCAACTTTTTTTGAAGTCGGTTAAAAAATAAA
TTTCAATAATACAAAATGCACAGGATTCACAATATAAAATACCATATTTTATTACATTTT
GTATTTTATTTCACACCTCATTTCCTTCTGGATTTCCTCTTTTTACTGGGTTTCGGGGCA
GCGGCGGCTGGGATCTCTCTCTTCTTGTGAGTCTTTTCCGAGCTTGGCGCTGCGGTGTCT
GCGACGTCGTCGACTTCCATGTTCCCCGCGTCTGGCACGTAGCTGAAGCCGGGCACGTGC
GGCTCGACCAGCTCGAACACGAGTTTCCTGTGCTGAAGATTCGAGCTGTCCAAGCTGAGA
CGGACCGTTAGCTCGTCGAACGTCTTCAGCACGACGTCCCCGCATTTCTGAACGTGTTCC
TCTTCATTATACGTGAATTTTTCAGATGGTAAATACAGAGGTCCTTCCAGTCCATATTTA
GGTATCAAGACTTGTAGGGCGTTCCGCTTCACCGCCAGTACAACTGCAGACTCTATTTCT
ACTCTGTTCTTGAATAAGATGTGAGTGTTGAGCGCCACGGAGGCGCGGCCGGCGAGCTGC
GCGTGGCGGTGCCGGTAGTTGAGTGTGTCGGCGAGCGCGGCCTGGCGGCGCGCGTCCAGC
AGCGCGGCGTGCGGGCCCGCCCCCGCCACGCTCGCCGCCAGCAGCCGGTGCACCACCACG
TCCGCGTACCTCCGTATGGGCGAGGTGAAGTGCGTGTAGATGGGACAGGCCAGTCCGTAG
TGGTAGTAGTGGTCGGCGGCGAGGCTGCCGCTCACGAAGTACGCGGCCTGCTGCATGCAG
CGCGTCGCCATTATGCGCAGCAGCGTGTTGAAGAACGGCCGCTCCGGTATCACGGCCTCG
TTCAGCGATTTCGAAAACGATTTGTTCGTTGACACGTCGATTTCGAAGCCCTGTTGTCTC
GCAGCTTTTAAGAAAGTATCAAAATTAGCAGGAGGCGGCGCCGGGTGTCTCCGCAACATG
GCACATTGAGGGAATTCTTCTAGAATCTTCTGAGCCACGCTGGTATTGGCTAACAACATG
AATTCTTCTACCATTGAGTTAGTGTCAACTATCTTCTTGGCTTGCACTTCGATTGGGTCG
TGAGTCTCAGAGTCTACCTGAAATCGTATCTCGGGCGAGGCCAGTAACAGGGCACCACTG
TCCAATCGCTTTTTCTTAAGCTTCTTAGCGAGTTTGTTGAGTACGCGCAGAGATTTCGCT
ATCTCGTCTTTGCGACTCGAATCGTCGATTGCGATCTGAGCCTCTTCGTAAGTCATCGCA
GCTTTTGACTTTATGATACTTTTGTGGAATTTCGTAGACAAGACATTAGCGTTCTCGTCC
ATCTCCCACACGCACGAGAAGGCGAGCCTTTCTTCGCCGCCTCTAAGTGAGCACAGGTTC
GAGCTAAGTAACTCCGGCACCATATCGATCCTCCTGTCGACGAGATATACTGTAGTTGAC
CTCGAAGCGGCCTCCTTGTCCAGGGCGGTGTCGGGCTTCACGAAGTACGTGACGTCAGCG
ATGTGCACGCCCACTTCGTAGGTCGCGAGCCCGTCGCTGGAGCCCAGCCTGCGGGCGTGC
AGCGCGTCGTCTATGTCCGTGCACCCGGGCGGATCCACGGAACATACGCACACGTCGCGT
AGATCTACACGTTTCTGCCTTTCCTCTTCAGGTATAGTCCAATCGTTGGGCGGTAGACAG
TTGAGTACGGCTTCGCTGAATCTCGCGTGAGGAACGTCGTGCTCTAGCAGTATGACCTCG
TTTTCTGCATCCTTGTCACCAATTGGCCCGAGTGCTCTTACAAGATGTCCAAGTGGATAT
CGGCTGTTCCTGGGCCAAGAGTCAAGAGCAACCAAAATGCGTTGCGAGGCCAGTATTTCA
CTCTGTCTGGTTTCGATACGAACACGAGGAATTCTCTTCTCCGCTGGTGTGAAGAGATGA
CGTGTTGCACCATGAAATTTACTAGGCATTAGAATTCCACAATATTGTCTCCATTTCCTT
CTAATTATCCCTACTACTTTTCCTGTAGGGGTGATTTCGTCATCATTATCTACTGGTTTT
GCAGCATCAAGCAAAACAGTCTCTTCTTCTAAAATATTTTCAGGGTCCTCAGTTTTATCC
TCTAGAACTATATTACTAGGTTTCCGCCATTCTTCTTTAGGGAAAATTTCTATCGCAACT
ATATCACCATCTATAGCACGGTTTATGCCTATGTGACCTTGCAATAATATCGACTTTTCA
AAACCATTAACACTGGCATTTCCTTCCAAGAAATTTTCTCTAGAAGCATGATATGTGCCT
TGATACAGTTGGCCACAGCGGATCCCCTCATGTATTTGTGATGGAGTTAAATGTGCAGGG
TATAATGCATCTTTAGAGCATGTTTCAGGCATTACATTCTTAGATAGTTTATCCACTAAA
CCAACAAATCCAGATACGTTTTCTATGTAATCTTTAATTGAACAACAAATAATGCCATCT
TCTTGGGCAAGCTTTCGATTATTTTCATCATCCGTCACCAATATTATCTTTGGGAATTTT
CCATCAAGGCTATTTATGCTCAAGTGATATTCGTACCAAGATGTTGCTTTACGTATAGAT
CTGTCATTCCTATCATTTTGTTTCTCACCCGGTGAGCGCTCTATATAGGTATCCTTGTGA
TGTTCATTAACAAATGAATAAAACTTTCTCTTTTTGTTGGAAATTATATCCAGCAATCTC
TGGAAAACTGCAGTATTTTGATGTTTCACTTCCTCAAGTACAGTTTGTAAAATGATAACA
TTAGTCAAAGCATCTTCCTCCAAAACATCTATTTGATGTAACACAACATTAGTATCCAAT
ACTAGATAATGTGGGAAATCAAACAAAGCACATGGAGATTTGGGAGAGGTCTCCAATACC
AATTCATCATCTTTGTGTGGACATGTGTTACATGCTGCAGATCCGCACAATAAATCGTCA
CGCAAGTAATGTTCTCTTACAATCTTCAATATGTTACCACGCTTAGTTTTGGTAAGAAAG
GTTTTTGTAGTCCACATTTCATCTGTGTTGAAGCAAGCTTCAACCGATAGACTTATATTA
GTTTCTAAAATTAAAATTTATTCAAAGTATTAGTGAGAAAGACAAAATATTATAGGTACG
GTATATTAGAATGTAAATATATGCGTTTTTGTACGTCAGACGTCAGTAACGTCA
(6234 bp)

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