SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoN4EE_TR30127_c0_g1_i7
Scaffold_idBomo_Chr5
NCBI non-redundant
(nr)		PREDICTED:_agrin-like_isoform_X6_[Papilio_polytes]
Ontology
GO:0001934 P positive regulation of protein phosphorylation
GO:0002162 F dystroglycan binding
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005604 C basement membrane
GO:0005605 C basement membrane
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005796 C Golgi lumen
GO:0005886 C plasma membrane
GO:0006024 P glycosaminoglycan biosynthetic process
GO:0007009 P plasma membrane organization
GO:0007268 P chemical synaptic transmission
GO:0007275 P multicellular organism development
GO:0007528 P neuromuscular junction development
GO:0008582 P regulation of synaptic assembly at neuromuscular junction
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0030154 P cell differentiation
GO:0030548 F acetylcholine receptor regulator activity
GO:0031012 C extracellular matrix
GO:0032092 P positive regulation of protein binding
GO:0033691 F sialic acid binding
GO:0035374 F chondroitin sulfate binding
GO:0042030 F ATPase inhibitor activity
GO:0042383 C sarcolemma
GO:0043087 P regulation of GTPase activity
GO:0043113 P receptor clustering
GO:0043395 F heparan sulfate proteoglycan binding
GO:0043525 P positive regulation of neuron apoptotic process
GO:0043547 P positive regulation of GTPase activity
GO:0044325 F transmembrane transporter binding
GO:0045202 C synapse
GO:0045213 P neurotransmitter receptor metabolic process
GO:0045887 P positive regulation of synaptic assembly at neuromuscular junction
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051491 P positive regulation of filopodium assembly
GO:0055117 P regulation of cardiac muscle contraction
GO:0061098 P positive regulation of protein tyrosine kinase activity
GO:0070062 C extracellular exosome
GO:0086036 P regulation of cardiac muscle cell membrane potential
GO:0099601 P regulation of neurotransmitter receptor activity
GO:1903277 P negative regulation of sodium ion export across plasma membrane
GO:1903407 P negative regulation of P-type sodium:potassium-exchanging transporter activity
GO:2000541 P positive regulation of protein geranylgeranylation
Transcript
Level		FPKM:0.53 TPM:0.71
ORF EntryO_BomoN4EE12685_complete:A_BomoN4EE_TR30127_c0_g1_i7
Sequence
(Nucleotide)
TTGCGGTTTGCAGTCTCATTTTAATATTATCTCTTCATATTCTCAACAAACTAAGTTACA
TAAAACATAATTATATTCCGTGACAAACTGGACTGGAAGATATTTATAAAACCCTATATA
TATATACAGACGTGTATTACTCGTATTTGTTTTAAAAGTATAACAACTCTCAACGTAATA
CGGATCACATAAATTTAAGTCTGAATTCACTATACGGATTCTAATCTAAGTAGATTTTTT
CGCCGAACGCGAAGCGAGATGCAAAGGCTTATTGCGAAACTGTTACATTTTTATTAATAT
TGTCATTGTTTTATTAGTACATTAAATTACAAATAGATCCCTACGTTAAATGTAGAGAAA
CGAATATCTAAGCGCCTTACATTTAGCACACAAGAAACCTGAACCGAAACATTACCTTAG
GCAAATATCTAAACCTTTAAACATAGTTTCACTATAATGTTAATTAGCTTCTTTTCTCTT
ACACAAATTTACAAGGCTATAAAATTGAAATCAAAATGAAATTCGTTATTTTTAGTACAG
TTAAATTTTATTAACGCTACGACGGGTATTTTACAGTGAATCCAATATTCATTTAATTTT
ACTTAAAAAAACTTTTACCGTTAAGAAGTGAATAGTTTTTTTTTATAAATTTTAACATAT
TCTCAAGTACGATCGCAAATTTTTGCAGAAAAAATGCTTTTACAGAGAGTTTACCTTTGT
AAATTCGTTTGTAAATTAAAAAGAATTTTATGTTCTTAATCTAAATATAATACTGAATAC
CACTTAGTATCTTTTATTTTAGTTATTTTGACGAAAACTACTGATTTGTATATACCTTAA
GCTGTTTTGAGATTATACATAGTCATTATATTTATATGTCATACTGAGTTTCAGGTCTAC
AAAAAGTAAAAACAATGTGAAAATTATTTTAAGACTATTTACATATTTTACATTTCTAAC
CTTTAAATAAAACTTGATAATCTCAAAAAAATGCATTAAACATTAAAACTGTGACATCAC
TATACGGAATAAATAAATCTGTGAATAAAAAAAGGATAATTTTATTTTTCACAAAATAAG
CTAAGGCAATTCGTTAAAGACAATGAATGGCACACAATAACATAATCTAGGGAATGTTAT
GAACTGAATTTATTAAAATATTAGGAATGCTAAAATAAATTATCATTATTATTTACAAAT
AAAAAAAACTGAACTAAAGTAAATTACAACAGAAAATGTACGGTAAAATTATTATGGCAC
GGTTTACCTTTAAACATTAAAATCAAATTATGTAAATTAAAAATAACGAGATGTGAGATT
TGCTGATATGTGCTTCTTATATATCTTTTACAAAAACCACCAGATCTCCAAAGATCCACG
AATATCATTCCACGTCTCGGATTGCTAGTAAAATACTTTTTACTTCGCGTAATTTCTACC
ACGACTACATATAAATATAAAAACTAATAAATCACTTTCCTACTGATAACCAAAAATTTA
TCATTGTCCTATTTTATGTCGACATTACACACCAACAGAAAACTCGTATCCCGTTCATTT
AATTATAAAATATCAAATCTTAAAAACTATTTCGGGATAATATTTTAACGATTTCTAAAT
AAAAATGATATGACACGTCGATATGAAAATTTACAATGTATTTTTATATTATTTCGTATT
GGAATGTACGTAACTATTAAAGCAGTTAAACATTGAACTACAATTTTCTTTTAATGTAAA
CATACATTAACAGTTTGAAGAGCAATGAAAGTATCAGTCTGGTTTTTTATTGCAATACTT
CACGATTTAATAGCCTTAATATTCAACAAACCTATTATTTATAGGATACCGCGGATATTG
TAAGCTTTAAAATTAAAATATCAGAAGAAAGGCATGATGATTAAAAGTAAGTTGCGATGG
ATTGCAGTTGGATCAGATAAGCGGAAAATGTGTGACGGAAACTTCTTAACTAAGGATCAA
ATTTGCGGGTACCCCGTATCAAATAAAGGACAATCTATAGAGATAATCAATCGCATTCAT
CCCAACTGAAATCTATCTAAAAACATAACGTACCATCATTTCTACTTCCAAAATATTTTG
TCTTCGAATAAACATTTATAGGTATACTATAATTTACTAGAGTTAACAATTTAATAATAA
GATCTTCTTAATATTAAGAAGTTTTTGCAAGATTTATACTCTACTTTTCATGTCTGATGT
GTCCGAGCACCTATATTGGGTAATGATATGATCAGTTGTAAACTTATAGTAAATTATCAT
TATGGCAATGTTTTATGTGAATATGCACTAAGAGGTGGATATAATATTTGTAGTAAATTA
AATTAAAAGTAAATATAAATTAATAGTAAAATAGACGTAATTCAGAGAGTACGGGGAAGA
GAGAATTTTATTTCATATCAATTTATGTTCATAATACAAAAGATTGCACTAAACATATAT
GCTGAAATCATAATATGAATACTACTACTTGATACTAACAAAAAGAAAAAAAAAAAACAC
AATAAAAACCAGAATACATCTGTATTGTCAAGTTTTATATACTATTTAAAACATCTCAGA
AATAATACTTTTAATATTATTTAATCACTTTAATTTTTTAATTACAATGTCGCAAGATGG
TTGTCGGTCGTATAGGTGAATTTAGGTCGATATGTCGTCCGTTCCCTTTGACACTCGCTA
CACAACCGCGGAGGCCACTGTATAGAGCGGCTGGCAACCCCAGAGGCAATGTCGGTGAGC
CCCCGATCCATAATTTGGGGTTCGATTTCGAGGGCACAAGCAATGATTGCGAGTATCCTC
TGACCGGTGGCAAGTCGTCAACCTGAAGCATGGCCAGTCTCTTCCTCCGCCGTATCGTCG
CGGTATGCCACCTCCCATCATCAACCCTTTTCTTGGACTCTAGAGACTGAAACCAATCTT
CGTGGGTAGCAGAATTCATATCCTTAGAATCTGTATCTGTATATATTAACTGAAGCTTTC
CATCGCTAAGACCCAATCCTATAAAGTCTCTGGGACGAACACCTATTTTACGTCGCCACA
TAAGAAGGCCCGAATCGTTGTAAGTTCGAAATTTTATTTCGTATCTAATACCGCGAGCTC
CGCTATTCCTGCGACTTGTTCTACTACGGTAGGAAAAGTAATTATTGCCATCGAAATTTA
CAGGGCTTCTTTCATTAAGCATTTCCACGTTAACCTTTTCTATTTCACAGTTTCTTCCTT
GATAACCATCATGGCAAATACATTTGTATTCGTTAAGCAAAGGGATGCATGTACCGTTGT
TCTTGCACGGAGTGAGACCATCTCCACAAGGTGGTCCTGTGTATTTAGTAACGCCAGTCG
TAGCGCAAGGCAAATGTTCTTCGTCTTGAATCATAGAGCACTTAGTCGTATCAGCACTAT
ATAGAGTCAGTGGATTACCATTCACAAAGACCTGTTGCAAGGCTCCAATAAAACTGCTCG
TCACTCCTGACATTTTGTGAGGTCGGATGTAAGCGGGCAAAGATCCTATAAACAGCGGTA
AAGTCAATTCTAAATGTGTCAGTGGTGGTAATGAATGGCCTTTTTGGGTCGGATGGTGGT
CGAGTTGTAGACTTCCGTGTCGACCAGCGCGCGATACTCGAGCTCGGTGCCAACGACCTT
TTGTAATTGGTACCGGGGACGTTATATTTGCGATACCGCTGCCCAAATTGTACCTAAATT
GTAAGTAACCATTAACCAAGTTAATCGCAATGAAATCCCCCTTGGCTTTATTAGACTGCC
CTGTGTAGAGGAGCATTCCGGAAAATCGGTTCGTTAAAAACCAAATTTCTATTCTGAACG
CTTTGCCCAGGCCTTCGAGTGGCGGTAATTCAATGTAGCTAGTCCCGTTGAATTGAGGAG
ACCACGTTTCTTGAATTACAGTTACGTCATTGCTGCAAGTATTTCCATTGGAGCCGATTT
CACCTCCAAATAAACATCGGCAGACATGGCCACCGTCGCTTCCAATATCACACAATAGCC
CTTCATCATATCCACAAGGATTTGACTCGCACGGATCTAATCTCTCATCACAATTGGCTC
CTTGGAATCCAATAGGACAACTACAAGTATATTCGGTGACCGACCCTTCAATAGATTTAC
ACGTGCCTCCGTTCGTGCATGGAATACTCATACATGGATTCGATTGACATTCCCGAACGT
TTTCAATGGCGATCACTAATGAGTCGGGCCGGCCCAATTTTTTTGTTACTTGATGACGTA
TTATCCGTAAGTACTTTACGCAGCCGACAAATCCGTTACGCGTACCGATATTATCGAATA
CCCTCGAGTAATTGGTAGGTATAGAACCAACGTAAGCATCCTCGGCGAGATCCAAAGCTT
TCAAATGTCCCATCGATTGCCCTACAACATCTTCCATATCATCAACTGACAATATACCGT
CACGATGATATCTTTTAGCAGATACTTTGTGATACTCGTTCATAGATATTTTTTCTAAGG
ACGTCAGAACTAGAACACCGTTACCGAGGTTGTACCTAAATTCTAAATATCCGTTGACCA
AAGCAAGCGAAACGAAATCACCAGTTCCGTCCGCCTTTTGTTGATTGTAAAGTATAACCC
CGTTCTCGGAGAACGCTTTAAACTCAATATCGATGTTCAACTTGTGATAAGCTTTCAAGG
GTTTTAGCCGTATGTAAGATGAGCCGTCAAAAGACGGAGTTTCGATATAAGCATTCAATA
GTTCGTCTTTGACCAGACTCTCGCAGTTGTTGCCGGTGTAAGGACCGGCACACAGACATG
TGTAAGTCGATCCTGGCAAATCGATACAAGTCCCGAGATTATAACAAGGCTCTGATAGGC
AAGCACTGTATTCCTCTGTGGTCTCTTGCGTTATTTGCTCAACACAAGCCTTTCTGTTCA
GTGTGGGTGTGAAGCCACGTCTACAAACGCAGCCGCCGCGCGCGCAATATGCACCAGCGA
GTGCTGAGCACTCCGCGTCCTCAGCGCAGAGGTCGCCGAGCAGGGCGCCCACCGCTCCGA
CAGTTGCCGTCGTTGCTGTTTGCGAACCTTTAAATTTCTGGCCCGTCAAAATACTGTCGA
AATCACTGGATGTTTCTTTCTTCGTCCAATCGTATTTATTGTAATATTTATCTGGGTTGA
GCAGATGTCTGGTTGATTTGGATGCCGCTCCGTCGTCTTGTTGCGTGAATTGAATGGGAG
ATGAGGGTCTGAGGGGGCCGGCTGTACCAGCCAGCTCATTTAGCTTGCAAGGACCGAACG
CTTGTACCACGATGTCTTCTTGCGTGCGGCACGCTTGTAACTTTAGATGGCATTCAGACT
CATAAGTCTTGCCGTCACTGCCGCATACCAGCATGTTCATATCGCTGTCGGGGCAGGGTG
CTGCTGTGCATTCACAGAGCGCTCCTCCTGTGCGCTCAGTACAAACCGCACCGAAATAGC
ACGACAGTTCCGAACAAGATGACGCTACGCCTCCTGTTTCCGGATCAGAGCATCCGTTGG
GTCCAAGTCTGCGTCTGTGGTCGGCACAAACAGTGCATTTCTGACCTTGCACTCCAGTTC
GACAAACACATCGCCCGGTCATTTGCTCGCAATCTTCTCTGACTGAACCAAAGGCCGAAC
AGCCGCACGGTATACAACCGGCATGTCCCGTTCCGATCCTCGGCAGACCCCAATACCCGG
GTTCGCAGCGGTCGCACTTGAGTCCGCCCACGCCCGCCCGGCACGAACACTGACCGCTCT
CGTCGCACTGCTCCCTAACTGACCCAAGTCTGTTGCAACCACAGCTCGTGCTAGGGACGC
AACCTTCCTCATGAGGACCAGTAGCTGGAGTCGAACCATCCGAACAACATCCATACGTAC
TCTCCGAACAATGCGACTTTTTTTCATCCGCCGCCTTCGTATCGTTTTTAGGACAACATC
GCGCGGCGGTCAATGTGATATGGCAGTAGCTACCGGCGGGGCAATCTTGACGGTGAGGTC
CGTTTCCGCAGTCAATTTCAAGACCGGTCGTTGGATCCAACATCGCTTTGTTGTTACCGC
AAGGCCTCACTTCCATACTCATAGCTATTGGCGGCACCACGGCTAGGCGATCTTTGCAGT
CTCCATAAAATATGACGTGCAGTGTTCCTGGCGGAGGCAATCTGCAGGCCGCCTTCTGCA
GTTCACACTCGTTGGGATAAGTTTGCATAGAACTGCCGCAAACTGGTTCACGCGCCGCTC
CAGTGCAGTCGGTTGGACAAATACATTCCCCCGCCGCACATGATGCTCCAAACGAACATT
GTACACCATCGCACAGCGCGCAATCTCCTTTGTAGGCGAACCGCAAATCACTTTGTTCTC
GACACGCTGTCGAGTCCAACTCGCATTGCGAGGGGTATGTTTGACCATCCGAGCCGCATA
CCACGTCCGATTCCTGTGCTTCAGTGCAGTTGTGATTACATTGGCATGTAGGGCGTCCAG
TTTCAATATCCACCACACAGTCTCCGCCTCCTTGACACGTGACGTCAGCGCAGGTTTGAC
AAGATCCGTTGTAGAGCACACGCAGTTCCCCTTCCTTTATCCCTTCTTGACATGCGTGCA
TTCTCATTTTACATTCGCTTCCGTAAGTATTATGATCTGTGGCACACACCGGCGCTAGTG
TCGCGTCACAAACCGGGCACGCACATTGCGCTGCGCCGTGACGCGCAACACAACCGCCGC
CCCACGGACACGACGCACGAGCACACGGATTTTCCAAACCACAAGGTCCCGCGTACGCAA
CACGGATATCTCGGTTATCGAGGCACGCGGCGCGCTCTAGATGGCAATGGCTGTCATACG
TCCGTCCGTCGGTTCCGCACACTGGCCGGACGATCGCCTCGCATTCCACGCCGCATCCAC
ACACAGCAACACCGCGCGCATCCAGAGTACATAATTCTCGGAGACCGCACTTCACAGAGT
CGCACGGGTGTTGTGCTGAAGCGCATTCTCCACGGTACGCTATAGTGAGCTGTTGTCTAG
TTCGGCACGACTCCCTTCGTAACGCGCATTCACTGGGGTAGTCTTTGTAATCGGAGCCAC
ACACAGCTGAGCCCGGTCGTACGATTAAATCACAAGATGGACCGCATCGGCAGGTCGGCG
ACCTGACTTCATTCAGCTGACAAACTCCTCCATCGGCGCATTCGTGCTCCGAACATGGAT
CGCATTTTCCATGGTATTTGATAGTCACGTTCAGTTGATTGTCACAGGCGTGCTTGTCGA
GATGACATGTGGACAGATACTCCTTGCCATCTGTCCCACAGACAGGTTTTCGTCTTTGAC
AACTACGAGGACACCTGCATTCAGCTTGCCCATACGTTGAGACACACCTTGCCCCCGTAG
GGCAAGTCACGCTCGTACACGGATCTCCTGCTTCACATTCTCCTTCGTGTTTAATCCGTA
AGTTGAGACGCCTTTCACAGGCCTCTTTTCGCAAGTAGCAATGGTTCCGATACGTCCGGC
CTGCAGTGGAGCATACAGGGGCAGTTGATGTTGGACAGGTTGTAGGACAGGCGCAATGGG
CTCGACCGTCCCCCAGGGACACACACTCGGCACCCCAACGGCAAAAAGTTTTTTCGCACG
CTTCTTCCGGAGCCGGTGGTCTTGGTTGATAATGTAAATCTTTGATAATTGACTTTATCT
TCCTTACAGTGTCAATATTAGACAGAATTGGATCCACGAGTAACTTCAGTGGATAAGATA
ATTCTCTACTGAAGAACAATGCTGCTCCTCTTCGGACGACGCCGGCGCATCGTGGCTTCA
CTGACCTACTTTCGGCCAATATATACGCTCTGTTCGAAGAATTAAACGTTCTCGTTTCAA
AATTTAAAATATCGCTCAAAAAATTCACGTCGCCTTTCAAAACTCTCCTGATATAAACTT
TGAAAACACTGCCTTTTACTTTACCCCGTTTCCGTTTTTGCACACTTGAGATTTTCCCTG
TGAAAATGTACTTAGATGAAACGACCAACTGTCGCAACGTATCATTATTGTGTCTCAAAA
CGGTATTATCGTAAGGGCACCTCGGCGTGAAATTTCCGTTCGCTTTTATAATAGTGTTTC
GCTTTCTGAACTTATCTCTTTTCGTGAGATCCGTGCATGTCGCAAAAATTAACACTAACA
CAAAAATATAAATTTGCCGTTTCATTTTTATTATTTCACTGGCATTCGTTTGCGCGGTCT
TTCAAAAACGATGTACATAATTGAATGAATACACCTAAGTTTTTTTTTTCGCACGAGAAC
GTAAAATAGATCGGTGGGCTTATGAGATAGCATCGGGATAATCGCCAAGAGGTACAGATG
CGCGCGCGCAGCCTGCCTCGCTACTCACGACTGGAGGCTTTGTAGAACCCACTGCAACGT
GCAACCTGTTGTATGCAAATCCTTAAGCTCACTACGGCATCTGTAAGCCGTCTACTATAA
ATATTAAAGCAGCA
(8474 bp)

- SilkBase 1999-2023 -