SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoN4EE_TR30102_c2_g2_i3
Scaffold_idBomo_Chr18
NCBI non-redundant
(nr)		PREDICTED:_DNA_repair_protein_XRCC1_isoform_X3_[Bombyx_mori]
Ontology
GO:0000012 P single strand break repair
GO:0000724 P double-strand break repair via homologous recombination
GO:0001666 P response to hypoxia
GO:0003684 F damaged DNA binding
GO:0003909 F DNA ligase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006284 P base-excision repair
GO:0006288 P base-excision repair, DNA ligation
GO:0006297 P nucleotide-excision repair, DNA gap filling
GO:0006974 P cellular response to DNA damage stimulus
GO:0010033 P response to organic substance
GO:0019899 F enzyme binding
GO:0042493 P response to xenobiotic stimulus
Transcript
Level		FPKM:1.16 TPM:1.54
ORF EntryO_BomoN4EE12429_complete:A_BomoN4EE_TR30102_c2_g2_i3
Sequence
(Nucleotide)
AATAAACTAGTATCTATCAAACAAAAGTTTCTCCTTGTTTTTTCTTTATAAATTGCATTT
GGCTTTCGTTAATATACCGTTATTTATACATTGAAGCACAGATAATAAATTACTATTAAG
CCTATTCATTAATATTATTACACGTTTAAACACAGAACAGCCACGCTTAAACGCGTTTAA
ACTAAATCTATCTTTTCAATAAAGTAAAAAGCATACCTTCTGTCCTCATTAAACCTATCA
ATCGAAGCAATAACATCATTATCATCACTTTTCATGTAACAAACATGGCTTGGGGCTTTT
CGTTTAAATGATTTGGCTGTATGAGGTAAATCCACGATACCGGTCCGACGGATGAAGAAA
AAAAAATTCAATGTTTTCTAAACAATATTAATATTTTAATTTCGATTTTCGACCGAATTT
AACGAACCAGCTATAAATTATTAAAATTTTTACATTTTTTTTAAATAACTCATCATAAGT
GACCGTTTATTGTTAATGTGCGTTAAGGGTAAAACAATTATCTTTATCAAGTACTATAGG
GCCAAATTATTACATGTTCCTAAATAAAGGTGTATCGCTATGCCGCGCGTGAAAATTGAT
TACGTCGTTAGCTTCAGCAGCGAGGATCCTGATCACCCAGCTAACAATCTGTTGGCATTG
GAAGTGAACAAGAAGAAATGGCTGTGCTGCAAGGGAGAGTCTTCCTGCTCAGTCGTACTT
CAGCTGGCCAAGGCAGTCCAGATATCATCAGTCTATCTTGGTGTGCATCATGCTGCTACT
GTGGAGGTGCTCGTTGGAAGATCTGAAAAACCTGATGAACCCTTTGAGGTACTGGTCCCC
AGCAGCGTGATGTTGTCGCCCAGCGAGTCCCGGCGCGCCGAGGGCGTGCAGCGCGTGCGG
GCGTGGCGCGGCGACCAGCTGGCGGCCGCGGCCCGGGGGCGCCGCTGGGACCGCCTGCGG
GTCGTGTGCGCGCAGCCCTACAACAGGCACTGCCAGTTCGGCCTCTCGTTCTTGCACATC
GACGAGCCCGGGGACGGACCCCCGCCCGCGCCGCCGCGCCCCCTCGCCCTGGACACCTTC
TCGTCGGACGAGGAAGAGTTCAAACCTGGGGAATTATTCGCTAAATACTACACCCAGAAG
GATAGTCCGCTGAAACTGGGGGACGATAAAACTAGCAGCCCGGCGAGTACAGAATCCCAA
ATACACAAGGCGACGTCCCGCGCGCTCCGCAACGTTCCCGGGGACTCCCCCGCCGCCTCC
CCCGGCCTCAGCGCGGCGGCCACACTCCGACAGAGCAAACAGAACAGGCCGGCCGGGCGG
CGCCGCTCCGACAGCGACGGGGACGCTCGGATGCACGATGAAGAGGACACCAGACACCAT
GCAAAAATAGACCAAACCGTTAATAGACATAAGGGTGACAAGATGACCGATGACAATAGC
GCGGGGGACCCGGTGAGCTAGATTTGTCCACCAGATGCAGGAGCGGCGGAAGCGGCGCGG
AACGCCTGTCGCGTTGTTGCCGGGAATATATATTTGGTTGAAGGACGGGCCAACCCGCGG
TGAACAACCCGTTGACTTCACAACGCGAATGTTGCCTGAGACGTGAGGTCGAAATGTCAA
TTGTATTGTATAATAGCCTTCTCGTTTATAAACTGGAATACGGATATAGGCAAGACGGCG
GTACCCAGTGTCCGTAAGTCGCCTTTCGACGACCCGGCTCACGGCTTGCGGTGACGAACA
GACAAATAAGGCTTATCCTATTATACTGTATTAGTCATCAGGGGTGATACTGATGTCCAT
ATTGTGTGATCACAGAAAGAAGTCCAGAAAAATATAGACAATATATCATCGAGAGCAAAG
CGGGTGAAGCGAGACGACAGCGCCGGGACCGCGCCCGCCCCCCGGGGACAGCTCGGTGAG
TCGCCCGGGCCGCTACACTCCACACCTGACCGCTGGTGTCATTAGTATATGTTACAGTCG
CGTGTGTCGCAGCGGACGTGCTGCGCGGCGTGCGCTTCGTGCTGAGCGGCTACCAGAACC
CGCTCCGCCAAGAGTTGCGCCGCGAGGGGGTCGCGCTGGGGGCGCGCTGGGAGCCCGTCT
GGGGGCCCGCCTGCACGCATCTCATATGCGCGTTCCCCAACACGCCGAAGCTGCAGGAGG
TGCGGCGCGTGGCGGGCGGCGCCGTGCCCGCCGTGCGCGCGGACTGGCTGCGAGCGTGCC
GCCGCGCGCGCCGCCGCGTGCCCTGGCGCCCCTACGCCACGGAGCCGCACCAGCGCACCG
CACCACCACACGCTGCAGGTTCACGCACCACGCCGACAGTTCGATTGCTCATTCATTAAT
AAGAACAGACGGACGCCGCTACCAATATTTTTAAACCACAATACAAAATTAATTATTATT
ATTATTTTTTATTTCCTTTGTAGGCAGACCAGCATACGGCCCACCTGATGGTGAGTGGTT
ACCGTCGCCCGTGGACTTCAGCAATGCCAGGGGCAGAGCCAAGCTGCTGCCTACAAATTA
GGCAAAAATGTAATTAAAACGTAATTTTGACCAATTACTTGTCGTCCAGAAACTGACGAG
TCAGCGGACACCGACGAGGAAGTGCGGGACCGCGGCC
(2617 bp)

- SilkBase 1999-2023 -