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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoN4EE_TR29540_c0_g3_i2
Scaffold_idBomo_Chr25
NCBI non-redundant
(nr)		PREDICTED:_homeobox_protein_prospero_isoform_X2_[Bombyx_mori]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001708 P cell fate specification
GO:0001754 P eye photoreceptor cell differentiation
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005875 C microtubule associated complex
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006909 P phagocytosis
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007400 P neuroblast fate determination
GO:0007402 P ganglion mother cell fate determination
GO:0007405 P neuroblast proliferation
GO:0007406 P negative regulation of neuroblast proliferation
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0007416 P synapse assembly
GO:0007417 P central nervous system development
GO:0007419 P ventral cord development
GO:0007420 P brain development
GO:0007422 P peripheral nervous system development
GO:0007423 P sensory organ development
GO:0007465 P R7 cell fate commitment
GO:0007619 P courtship behavior
GO:0008049 P male courtship behavior
GO:0008104 P protein localization
GO:0008285 P negative regulation of cell population proliferation
GO:0008356 P asymmetric cell division
GO:0010001 P glial cell differentiation
GO:0010628 P positive regulation of gene expression
GO:0010629 P negative regulation of gene expression
GO:0042673 P regulation of retinal cone cell fate specification
GO:0042676 P compound eye cone cell fate commitment
GO:0045165 P cell fate commitment
GO:0045178 C basal part of cell
GO:0045179 C apical cortex
GO:0045180 C basal cortex
GO:0045664 P regulation of neuron differentiation
GO:0045676 P regulation of R7 cell differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048813 P dendrite morphogenesis
GO:0050771 P negative regulation of axonogenesis
GO:0050909 P sensory perception of taste
GO:0055007 P cardiac muscle cell differentiation
GO:0055059 P asymmetric neuroblast division
GO:0055060 P asymmetric neuroblast division resulting in ganglion mother cell formation
GO:0060385 P axonogenesis involved in innervation
GO:0070314 P G1 to G0 transition
GO:0070983 P dendrite guidance
GO:1900180 P regulation of protein localization to nucleus
Transcript
Level		FPKM:5.21 TPM:6.94
ORF EntryO_BomoN4EE11580_complete:A_BomoN4EE_TR29540_c0_g3_i2
Sequence
(Nucleotide)
TCCCCGCCAGCGAGATTCGAACACCAGTGCATCGCTCGATACGAATGCACCGGACGTCTT
ATCCTCTAGGCCACGACGACTTCGAAAAGAAGAAGAAAAGAAGAAGTGTTCACGCTTAAG
TTTTATTTCCTATATAAATTAGCCATTTTACACATTAAATAGCTTTATATTAAGAATTAC
TATTTTTCTAAAATTAAAAACTAAATTTCAATATTGAAATGATAGTCCAGCAGAAAAACT
ATTCTAAATTAGATTTTTAGCACAAAAAACATTTGACGCGTCACAAACTAAGTGTGAACA
GCAAACAAAATAATAAGGCGACGGTTACGAAAAAAAAAAAACCCTATTATCACCGGCTCT
AAACAAGCAAAGGGGACGAAGGGTCTGGCGTAACGTCTTTTCGCCCTCGCCCTTAAGACG
TCGAGTTCCTTGTCGACAGTCGCACGAGCGGGCCGGCTGCGCAGCCCTTAGACTTGACCC
GCTAAATTCAAATTCGACAGAGCTCTCTTGGAAAAAAAAACCTATTATATTTACAATATT
AAGAATATCGAATTCCTTTATTTTAACAGTTAACTCTTTTGTTGTTTCGCATTTGAATTT
CGAATTACAATTTTTTTTTTCTTTATTTAAATCGGGAAACCTACGCTTATAGTTTTAATG
GTAGATAGTGCAATAATAATATAGTGATTGTGTAGTGAAATGCTATGGTCTGAAAAGGTG
CTATACGAAGATGAGGTGTCTCTGGTTCATATGAGTTGGATTAATTTTTAAGGATCTCGG
CTTCATTGAAGACTTAGTAAATAACAGACAATCATCGGCTGTTTGACGCGGCATCTACAC
TGTGCTACATCTTTAGATCGATCCCGGAGGCCAGAGCCTTGTTTTACATTGGATAAGCGT
CTAAAATCACATTAATGAACGGGCGATGCAGCGCGAGTAGCGCGGTGGGGCCCTGCCCGC
CGCACGCCCGGCCAATAAGGGCTCTCCAAGCCTATAATGTCATCGGAGGAGGAGGCCGAC
TCTCACGCGCCCTACTCGGATAAACTACTAAGGAAACAGAAACGCGCCAGACAGCGCGTG
GACGCCGGCGAGCCGCGCAATTCTTACTCGACTCTCGCGACGAACGGAATCGCGCCCGCG
CGCGCCGCACTCATGAGTGGTGGACTATACAGCGCCATCTTCGAGGGCCGCCAACACTTC
GGCCTCTTCGGACCGGGATACGCGCCGGCCGAAATGTTGAACGAACTTCTCGGACGAACA
ACAAAACAAGACGACAACGGAGACGAAGCGAACGGCGGCGTGATCGCGCACCGGGTCCTC
AGAGACATCCTACAGAGCCGCAATAAAGAGTTACTGCTCTCCTCGGATAACAACAACGTA
CTAGCAAATAACAACAATGACGAACCGAAAACAGAGAAACGATCACCGGAACGACCCTGC
TCGCACGACTCACGGCCGGACCTGGACAACGCCCTCCTCTCGCTCGAAAATCCCGGGAAC
TCACACGCGTCTCCGCCTCCAGCTCCTCCGTCTTCAGAGAACTTAATCGCTCCTAAGCCT
GAACCAGAAGATCGTGATAGTGATGCTCAACGCTCCTCCCCCAGACCCTTAGATGTAAAA
CGTGCTCGTGTTGAAAATATAGTGTCTACGATGCGGTCGAGTCCTGCGCCGCAACAACCA
CAGGTAAATGGCTGCAAGAAACGGAAGCTGTATCATCCGCAGCAGCACGACGGTGCAGCG
GAGCGCTACGGTACCAGCCACAGCAGCAGCACCCACACGGTCTCAGACGACTCGGAGGAT
GACGGTGAGCGACCACCCATACAACAAAAATTAGTAGAAAAAAATGCACTCAAATCACAA
CTTAGAACTTTGCAAGAGCAGTTAGCTGAGATGCACGAAAAATATGTGCAACTATGCAAT
AGAGTAGGGAAGGAGTCTGAGACAGTCGATAACGACGGTGCTTCCAGTGATGTAGAACAA
ATCGAAGAGTCGATCCCGAAATCCGAACCCGCATCTCCGGCCAAAGAATTACCGCCGCCT
CTAACAAATACAGCTACACCAAAGATGTTTTCTCAAGTGATGAACCAAATGATGACCGCA
AAGATGCACGCGCAGGCAGTAGGACACCCACACCTTCAGCCAGGATTTAACGGAACGCTA
CCTATGATGCCGCATTTGCCACCAACAGATCATATGCATCCGCCTCATCCTCAAATACAT
CTTAATAGCGCGGCAGCCATGTATCTAAATGTCAGCCAAAAATTGTTCTTAGAACAGGAA
GCCAGAATAAAAGAAGCTGCTGAGCAACAACAAAACAATCAGCAAATAAGACCTCAGTCT
AACCAACATTCGCCGCAGCAGAGGCAACTTGGACCGACGCCGAAACCACCTCTCTCATCT
GAGCTGGCTGAACGATTGGATGCTTTACGGGTCAACACAGGATCTGTTGGTCCCATCTCC
GGGGCTGACCTTGAGGGCTTAGCAGATGTATTGAAAAATGAAATCACAGCTTCGCTTGCA
ACACTTATCGACTCTATCGTCACACGTTTCGTGCACCAGCGACGTGTTCTGGGGAAGCAG
TCTGAAGCGGCATCGGCAGCGGCAGACAAACTGAACAAGGATTTGATGCGAGCTGCACGG
CTCATTGATAGAAAGTCGCCAACGCCCAAGCCTCCGGAGAGACAGATGCCAGGCATGTTC
CAGACGCCGCCAAAACCGTTCGGGCCTCTATACGGGCCGATGAACGGCCAGTTCGAGAGG
GAATTGAACCCCGAACAGAGCGAAGCAATCAGCCTCGTCGTCCCATCGAGGAAGAAACGA
CATAAGGTCACCGACACACGCATCACGCCGAGGACCGTGAGTCGAATACTGGGGGAGGGC
GTCAGGCAGTCCCCGGAGAGCAAATTCCCGGAATCGCCGTCACCGCGGCCTTACACAGGA
TTACCAACCGCAGTGGCGATACCGAACCCATCGCTGCACGAGAGCCAAGTATTCTCTCCG
TATTCTCCTTTCTTCGGCGCGGGGGGCGGACTGGCGCGGTCGCCACCTGCAGCCCCGGAG
CGGGAGTCCCCGCCGTTGCCTCACGCGCCCGTGCTGCACCACTCAGAGCTGCTGATGAGT
GCGCATCACTCCTCGCCCGATTACCTGCGCCAACATGCCCGCATGCACGCCAGCGCGTTG
CACCAATCCCAGATGATGATGGACGGGCAGGACCCACATTCCGACTGCAACTCCACAGAC
CTGCCCTACGACGGAGTTCAGCCTACTTCCTCAACGCTAACGCCGATGCACCTGCGCAAA
GCGAAGCTCATGTTCTTCTGGGTCCGGTATCCGAGCTCAGCCGTCCTCAAGATGTACTTC
CCCGACATCAAGTTTAACAAGAACAACACAGCGCAGCTCGTCAAATGGTTCTCGAACTTC
CGAGAGTTCTACTACATCCAAATGGAGAAGTACGCTCGGCAAGCGATCAGCGAAGGTCTG
AAGGCGGCCGAGGACCTGCATGTTGCCGGTGACTCTGAACTTTACAGAGTCCTCAACTTG
CATTACAACAGAAATAACCACATCGAGGTACCTTCGAACTTCAGATATGTGGTTGAGCAG
ACTCTGCGCGAGTTCTTCCGCGCGATCCAAGGCGGGAAGGACGCCGAGCAGAGCTGGAAG
AAGTCGATCTACAAGGTGATCTCGCGGCTCGACGACCCCGTGCCCGAGTACTTCAAGTCG
CCGAACTTTCTCGAACAGTTGGAGTGAGCGCGGCGCCGACGCGACGCACAATAACTTTCG
GCATAACTAAACAAATTGGACGAATATTTCGCACACCAAAATTTTACGACACTCGCATTT
AGGCCTTCAGATTCAAAATTATTGATTAAAAAAGTTTAATTATAAAAGAAATTATTAAAG
TAATGAAGTTTGAATACGTGGTCCGTTGGACGTCGATCGGCGTGACGTGGGCGTGACGTG
GCGTGACGTGACGCAGGCGTGACGTGTCGCGCCACCGCCGTTGCGCTCTTTAGAAAATTC
CTTAGGTTATAACGAGTCAGAGAAAGTTTAAGTCACCTAGAATTTTATTTCTGCACATAA
TAATATATTTCGCTATATATAATTATTATTATTATTATATTATTAAGTATTATCTAAAAT
GGTTTTTATAGTTGTGTATATCTTAAAATCATTTATTGATTTATTCATTAAGCAAAACGA
TTAATATATTAACTGCTTAAGTT
(4223 bp)

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