SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoN4EE_TR29480_c1_g1_i1
Scaffold_idBomo_Chr15
NCBI non-redundant
(nr)		PREDICTED:_U11/U12_small_nuclear_ribonucleoprotein_35_kDa_protein-like_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005689 C U12-type spliceosomal complex
GO:0017069 F snRNA binding
GO:0071011 C precatalytic spliceosome
Transcript
Level		FPKM:29.56 TPM:39.37
ORF EntryO_BomoN4EE11389_5prime_partial:A_BomoN4EE_TR29480_c1_g1_i1
Sequence
(Nucleotide)
TGTCACAACACTATTTTTATTTAATCAAAAACTGACAGCACATTAAACGTCAGTTGACTT
CGTCTAATTAAAAATACCTACCTAGGTACCTATGGCATGTGTGAAACTAAATAAATAAAT
ATATAACTAAGTTTAAAATTAATTAAATTGTAATATGTTATTAAATAGCTACTATAACTA
TGACTAGATGACTCCACTGACTACAACTAAACAAGAGTCAATAATTTTTTTAAATCAGTT
TCACTTCAGAAATAAATGTTTTTCATTTTACTTTGATATAAAAGTAGAAAATGACCAAGG
ACGGCGAAACAGATTTTAAAAAATATGCCACAGAATACGATCCAATAAAAATTGGTTCTA
TTGATGGTACAGACGTAGAGCCTCATGATCGAGCAATATTACGTGCTATTTACTCTGAAT
ACATCCCCAATAAAAGGGTAAAGGGAAACCCAAATCATACCATCTTTATAGGGAGACTTA
ACCCTAGGACACCACAGGAAACTATCGAATCGGAATTTTCAAAATTCGGTAAAATCATTC
ACTGTCGTCTCGTAAGGGATCTTGTCACAGGAAAATCGAAGCAGTATGCTTTTGTAGAAT
ATGAAAAGTACAGTTGTATGGAAAAGGCACTAAGAGAGATGCACTTAGAATACATAGATG
GTTCAGAGATAATTGTAGAGCGGGAAGCTGAACGACGACTTCCTGGATGGAAGCCTCGAC
GCTTAGGCGGTGGGTTTGGTGGCCGCAAAGAATCAGGACAGTTAAGGTTCGGCTGTAGAG
ATAGACCTTTCCGGAAACCATACACTGTAGGAAACAAAATTGAGTCTGATACAAAAGCTG
AGTGGTAAAATGAATAATTATAAACCAATGTAGGAAACAAAATTGAGTCTGATACAAAAG
CTGAGTGGTAAAATGAATAATTATAAACCAATGTAGGAAACAAAATTGAGTCTG
(954 bp)

- SilkBase 1999-2023 -